Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_2010 |
Symbol | |
ID | 5831205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | - |
Start bp | 2241611 |
End bp | 2243722 |
Gene Length | 2112 bp |
Protein Length | 703 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641367810 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_001639479 |
Protein GI | 163851436 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.10211 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTCAAGG CGCGCGCGGG GATAATCGCG AAACAGGGGG CGGTCTCGGC AGGGCTGGCC GTCATCCTCG GCGTTCACGC CGGCGCCGGC ATGGCCGCAG ACCTCGCGGA ACGCGCACGG CCCCGCTTCA TCGATTGGTC CGGCTTCTAT GCCGGGGTGC AGGGCAGCGC GGGCGCTTCC TTCGGCAACT ACGATTTCGG CCCGACCACC ATCGGCTCGC GCCGCGTTCG GTCGATCTCG ACGGGCGATG CCACCGGCAG CCGCGATCTC GGCGGCGATG CCACCACCGC AGTCGGCGGC GCCTTCGCCG GCTGGAATTG GCAGGACGGG GCGCTTGTCT ACGGCATCGA GGCCGACCTC GTCGGAGCCA ATCTCAAGCG CGGCGCGCGC TCCGATGCGA CGGGCTTCGG CTATGAGGGG ATCGATCCGC CCTTCGCCTT GATCCGCGAG AAGACGGACG TGTTCGGGGC CGCCCGCGCC CGGCTCGGCT ACGCCTTCGG CAACAACCTG ATCTACGCGA CCGCCGGTCT CACGGGCGCC AACGGCCGGG TGCTCGCCAC CTATCCGGAT CTGGCCGGCG GCCCGACGGC CACGGCCACG CGCAATGTCT CCTATCTCGG CTTCACGCTC GGCGCGGGCG TGCAGTTCGC GGTCGATCCG CATCTCTCAC TCGGAATCGA CTACCGCTAC AGCGACCTCG GCGAGAGCGG TCGCTTCGGC CTCGGCACGC TGCCGGGCCC GGACGGCGGG CCGGTGACAA CCCGCACCAG CTTCGTCTCC AACAAGATGA TGGCCCGGCT GATCTGGCAC CCTCAGGCGC TGACGCTGGT GCCGGAGGAG GAAGACGAAA CCCCGAAGGA CGCTCGCTTC TCGCTGCACG GCCAGACCAC TTTCGTGAAC CAGGGCGTGA CGGGATTCCG CGCGCCCTAT CGCGGGCCGC AGAGCCTCGT ACCCGATCAA GCGCAGGCGA CGACGACCGC GACGCTGTTC CTCGGCCTCA AGCTCTTCGA GGGCACGGAA CTCTACTACA ACCCGGAATT CAGCCAGGGC TTCGGCCTGT CGCGCACATT GGGCGTGGCC GGTTTCGTCA ACGGCGAAGC GCAGAAGGCG GGTGCGCCGT TCCCGAAGCT GCGCTCGAAC CGCTACTTCG TCCGCCAGAC CTTCGGGCTT GGCGGCGAGA CGGAAGAGGT GCCGGACGGG CCGAATTCCG TCGCCGGCAC GCGCGACGTC GAGCGCATCA CGGTCATCGC TGGCAAGTTC GCCCTCGGCG ACTTCTTCGA CGGCAACGCC TACGCCCACG ACCCGCGGGT GGATTTCATG AACTGGGGCC TGTGGGCCGC GGCCGCCTGG GACTTCCCGG CCAACCTCCC CGGCTTCACG CAAGGCGTGA TGGTCGAGTA CAACCGGGCG GAATTTGCGA TCCGCGCCGC CTACACGCAG GTGCCCAAGG AGCCGTCCTC CGACGTGCTA GACCCGCGGG TGTTCGAGCG GGCCGGCGCC GTCATCGAGT TCGAGGAGCG CCACACGCTG CCCGTGCTGG ACCAGCCGGG CCGCTTGCGC CTCGGCCTGT TCTCGAATGT CGGCAACACC GCCAACTTCC GGCAGGTCGT GGCGCTGACG CAGTCCGGCG CCTTGCCCGA CATCAATACG GCGGCCGCAG CGACCCGGGA GCCCCGGCGC AAGAGCGGCG CCTACGTCAA TCTCGAACAG GCCCTCACCG CGGATCTCGG CCTGTTCGCG CGGGCGAGCG TCAATGACGG GCGCAACGAG AACCTGAATT TCACCGATAT CGACGGCTCG ATTTCGGGCG GCCTCTCGCT CAAGGGCGCG GCCTGGGGCC GGCCGCAGGA CACGGTCGGC GTCGGCGCCG CCGCGAACCG GATCTCGACC GCTCACCGCG CCTACTTCGC CAATGGCGGC CTCGGGCTCC TGATCGGCGA CGGCCGCCTC GACAACTACG CGCCGGAGCG GGCGGTCGAG GTCTATTACG CGCTGAACCT CACGAAGGCC GTGACGATGA CCTTCGACTA CCAGCACATC GAGAACCCGG CCTATAACCG CGACCGGGGC CCGGCCGATT TCTTCGGAAC GCGGCTGCAC ACGGATTTCT GA
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Protein sequence | MFKARAGIIA KQGAVSAGLA VILGVHAGAG MAADLAERAR PRFIDWSGFY AGVQGSAGAS FGNYDFGPTT IGSRRVRSIS TGDATGSRDL GGDATTAVGG AFAGWNWQDG ALVYGIEADL VGANLKRGAR SDATGFGYEG IDPPFALIRE KTDVFGAARA RLGYAFGNNL IYATAGLTGA NGRVLATYPD LAGGPTATAT RNVSYLGFTL GAGVQFAVDP HLSLGIDYRY SDLGESGRFG LGTLPGPDGG PVTTRTSFVS NKMMARLIWH PQALTLVPEE EDETPKDARF SLHGQTTFVN QGVTGFRAPY RGPQSLVPDQ AQATTTATLF LGLKLFEGTE LYYNPEFSQG FGLSRTLGVA GFVNGEAQKA GAPFPKLRSN RYFVRQTFGL GGETEEVPDG PNSVAGTRDV ERITVIAGKF ALGDFFDGNA YAHDPRVDFM NWGLWAAAAW DFPANLPGFT QGVMVEYNRA EFAIRAAYTQ VPKEPSSDVL DPRVFERAGA VIEFEERHTL PVLDQPGRLR LGLFSNVGNT ANFRQVVALT QSGALPDINT AAAATREPRR KSGAYVNLEQ ALTADLGLFA RASVNDGRNE NLNFTDIDGS ISGGLSLKGA AWGRPQDTVG VGAAANRIST AHRAYFANGG LGLLIGDGRL DNYAPERAVE VYYALNLTKA VTMTFDYQHI ENPAYNRDRG PADFFGTRLH TDF
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