| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0319 |
|---|
| Symbol | |
|---|
| ID | 5774608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 281601 |
|---|
| End bp | 282215 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 641315947 |
|---|
| Product | translin family protein |
|---|
| Protein accession | YP_001581653 |
|---|
| Protein GI | 161527827 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2178] Predicted RNA-binding protein of the translin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTAA AAAATGTAAA ACCATCATTG AATAAAATTT CAAAGACTTT AGGAAACGTT
CAAGATTCAA GAGAATTTTT ACTGAAAAAC ACTAGAGAGA TAATCGTTCT TTGTAGTAGA
TCAATAATTG CAATTCATAA AAATGATACA AAGACAGGAA AGAACAATCT AAAAAAAGCA
GAATCACTAT TAAAAAAATA CAAGAAAAAA GCTACAGGAG ATTTAAGAAG ATATATCATT
ACTCCCGAAC AAGAATTTGT TGAAGCTGCA TGCCTAATTG CAATTGTAGA AAAAAAAGAA
ATCCCATCAG ATAAAAAATT AGGAGTGATG CCAGAATCAT ATGTTTTGGG ATTACTAGAT
TGTATTGGAG AATTAAAAAG AATGGTTTTT GATAAAATCA GAATTGGAGA AATTGAAGAA
GCCACAAGAG TTTTTGAAGT AATGGAAAAC TTGTATCTGC AACTTTACAC TTTCTCGATG
TATGATAAAG TGGTAAAAGA AGCAAGAAGA AAAATCGATG TAAATAGAAT TTTAGTAGAT
GATGTGAGAT CTGCAATTAC TGAAGAAAAA AGAAGGACTG AATTAATTAA AACACTCAAA
AAATTTGAAA AATGA
|
|---|
| Protein sequence | MTLKNVKPSL NKISKTLGNV QDSREFLLKN TREIIVLCSR SIIAIHKNDT KTGKNNLKKA
ESLLKKYKKK ATGDLRRYII TPEQEFVEAA CLIAIVEKKE IPSDKKLGVM PESYVLGLLD
CIGELKRMVF DKIRIGEIEE ATRVFEVMEN LYLQLYTFSM YDKVVKEARR KIDVNRILVD
DVRSAITEEK RRTELIKTLK KFEK
|
|---|
| |