| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5820 |
|---|
| Symbol | |
|---|
| ID | 5751441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6476414 |
|---|
| End bp | 6477430 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641300952 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001566833 |
|---|
| Protein GI | 160901251 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.595518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.841519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCC TGCCAAGCAT TGCCGCCGTC TGCAGCCTGT CCATCGCTGC CCTGGGCCAC
CCGATTGCGC ATGCGCAGGA CATGCAGGTC TACGGCCAGA TCCGGCTGAC CGTGAACCAC
CTCAAGACCG GCAATGCCGG CTCCACCATG GAAGAGCGCG ACAACGCCTC GCGCCTGGGC
TTTCGCGGCA AGGAGGAGCT GGGCGGCGGC CTGCAGGCGC TGTTCGGCAT GGAGATGGGG
CTGGATGCGG ACACGGGCTC GCTGACCACG CCGGCCTTTC GCAACAGCTA CGTGGCGCTG
CGCGGCAGCC TGGGCACGGT GGCCCTGGGC CGGCTGGACT CGGCCAATCC CACGGGCTCG
CCGCTGTACT CGCAGGTCAC GGGCATCACC TCGTTCGCGG CCAATGACGC CGGGGCCACG
GCCATCGGCA CCTCCATGCT CAATGCGCGC AACCGCACCT CCAATTCGCT GGGCTACCAA
AGCCCGTCGT GGGGCGGCAC GGTGTTCCGT GCGCGCTACT ACCTGCGCGG CGATGCCAAG
GCCCCAGGGC TGGAGGACGA CGCCAGATCG CTGGACCTGG GCCTGAGCTA CGCCGCAGGC
CCGTGGACGG CCGGCCTGGG CTACGCCAAG GACACGCGCG CCGGGGGCCT GCTGGCCAAC
GAGTTCGACA GCAAATGGCA GATGGGCCTG CGCTACAGCT TTGGTGCCAT CGAGCCCTAT
GTGCTGCTGG GCCGTGACCG CTTCAACCAC AAGCCCGGCG TCTCGCGCGC CGACGTGGAC
TACTGGATGC TTGGCACGCG GCTGCGCCAT GGCGCACACG CCGTGGTGCT CAACCTGATG
CAGCGCGACG TGCAGACCTC GCTGACCGGC AAGCGCAGGC GCCAGCAGCT GGCCTATACC
TATGCGCTGT CCAAGCGCAC CGAACTGCAG GCCTTCGTGG ACCACGACGG CGTGGACTCC
AGCCGCCCCA ACGTGGCCGT GCGCGCCATC GGCGCGGGCG TGCGCCATGA CTTCTGA
|
|---|
| Protein sequence | MKALPSIAAV CSLSIAALGH PIAHAQDMQV YGQIRLTVNH LKTGNAGSTM EERDNASRLG
FRGKEELGGG LQALFGMEMG LDADTGSLTT PAFRNSYVAL RGSLGTVALG RLDSANPTGS
PLYSQVTGIT SFAANDAGAT AIGTSMLNAR NRTSNSLGYQ SPSWGGTVFR ARYYLRGDAK
APGLEDDARS LDLGLSYAAG PWTAGLGYAK DTRAGGLLAN EFDSKWQMGL RYSFGAIEPY
VLLGRDRFNH KPGVSRADVD YWMLGTRLRH GAHAVVLNLM QRDVQTSLTG KRRRQQLAYT
YALSKRTELQ AFVDHDGVDS SRPNVAVRAI GAGVRHDF
|
|---|
| |