| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3788 |
|---|
| Symbol | |
|---|
| ID | 5749371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4167865 |
|---|
| End bp | 4168797 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641298887 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001564805 |
|---|
| Protein GI | 160899223 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0896823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.664423 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGA AAAGCCTGCA AGACCTGGAT ATCTTCGTGC GCACCGCAGA CAGCGGCAGC
CTCTCGGCCA CTGCGCGTGC CCTGGACCTG ACCCCGGCTG CGGCCAGCGC AGCGCTCAAG
CGGCTGGAGG CAGAGCTGGG CGTGACCCTG TTCGTGCGCT CCACGCGCAG CCTGCGGCTC
ACGCAGGAGG GCGAGCTGTT TCTGGAGCAC TGCCGCCCCG CGCTGGCCGG CCTGCGCCAG
GTGCGCGACC AGCTGGCTGG CGGCCAGGCC GCTTTGCGCG GCACGCTGCA ACTGGCCGCC
CCCTCCGACC TGGGCCGCAA CGTGCTCATG CCCTGGCTGG ACGAGTTCCA GAGCCAGCAT
GCAGGCGTGG ATCTGCGCCT GCACCTGTCC GACCGCGCTG CCAATGTCTA CAGCGAGCCT
GTGGACGCGG CTTTTCGCTA TGGCAGGCCG CAGGATTCCA GCCTGGTGGC CTTGCCGCTG
TCGGACACGC ACCGCCGCGT GCTCTGCGCC GCGCCTTCCT ATCTGCAGGA ACGCGGCGCA
CCCGCCACCC CCCACGACCT GGCCGGCCAT GACTGCCTAT GCTTCATGCT GGGCGAGGAA
GTGCACGACC GCTGGAGCTT CTGGCCGGCA GGGCAGGGGG CTGCCGTACC TGAGCCCGTC
CATGTCCGGG TGCGCGGCCG CAATGTGGCC AATGACGGAG ATGCCGTGCG ACGCTGGGCC
GTGGCCGGGC GGGGGATTGC CTACAAATCG TATTTCGACG TGGCCGAGGA CCTGGCCCGG
GGCCGCCTTC TTGCGCTGTG CACCGACTGG ACGACCGAGT GCGTGCCGCT GTTCCTGGTC
GCCCCCAGTC GCAGGCAGTT CACGCCGCTG GTGCGTGCGT TGCGGGATTT TGTGGCGGTG
AGGCTGGCCG AGCTGGAGGC GGCACAGCCC TGA
|
|---|
| Protein sequence | MPMKSLQDLD IFVRTADSGS LSATARALDL TPAAASAALK RLEAELGVTL FVRSTRSLRL
TQEGELFLEH CRPALAGLRQ VRDQLAGGQA ALRGTLQLAA PSDLGRNVLM PWLDEFQSQH
AGVDLRLHLS DRAANVYSEP VDAAFRYGRP QDSSLVALPL SDTHRRVLCA APSYLQERGA
PATPHDLAGH DCLCFMLGEE VHDRWSFWPA GQGAAVPEPV HVRVRGRNVA NDGDAVRRWA
VAGRGIAYKS YFDVAEDLAR GRLLALCTDW TTECVPLFLV APSRRQFTPL VRALRDFVAV
RLAELEAAQP
|
|---|
| |