| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3518 |
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| Symbol | upp |
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| ID | 5749103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3863925 |
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| End bp | 3864554 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641298621 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_001564539 |
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| Protein GI | 160898957 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000866568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.165207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTACTC TGCACCTGAT CGACCACCCG CTGGTCCAAC ACAAGCTCAC GCTGATGCGC
CGCAAGGAAG CCAGCACCAA CAGCTTTCGC CGCATGCTGG GCGAGCTGTC CACGCTGATG
GCCTACGAGA TCACGCGCGA CATGCCGCTG CAGGACATCG AGATCGAGAC CCCGCTGGAG
ACCATGACCG GCAAGGTCAT CGACGGCAAG AAGCTGGTGC TGGTGTCCAT CCTGCGCGCC
GGCAACGGTT TCCTCGACGG CATGCTCAAC GTCGTGCCCG GCGCGCGCAT CGGCCACATC
GGCCTGTACC GCGACCCCGA GACGCTGCAG CCCGTCGAGT ACTACTTCAA GATGCCCTCC
GAGATGGAAG AGCGCGACGT GCTGGTCGTC GATCCCATGC TGGCCACGGG CAACTCGGCC
GCCGCCGCCG TGGCGCGCCT CAAGCAGCTG AACCCGAAGT CCATCAAGTT CATGTGCCTG
CTGGCCGCGC CCGAAGGCGT GGCCACCATG CAAAAGGCCC ATCCCGACGT GGACATCTAC
ACGGCCGCCG TGGACCGCCA GCTCGACGCC CACGGCTACA TCCTGCCGGG CCTGGGCGAC
GCGGGCGACC GCATCTTCGG CACCAAGTAG
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| Protein sequence | MSTLHLIDHP LVQHKLTLMR RKEASTNSFR RMLGELSTLM AYEITRDMPL QDIEIETPLE
TMTGKVIDGK KLVLVSILRA GNGFLDGMLN VVPGARIGHI GLYRDPETLQ PVEYYFKMPS
EMEERDVLVV DPMLATGNSA AAAVARLKQL NPKSIKFMCL LAAPEGVATM QKAHPDVDIY
TAAVDRQLDA HGYILPGLGD AGDRIFGTK
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