Gene Daci_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3407 
Symbol 
ID5748993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3740628 
End bp3740912 
Gene Length285 bp 
Protein Length94 aa 
Translation table11 
GC content58% 
IMG OID641298512 
ProductVRR-NUC domain-containing protein 
Protein accessionYP_001564430 
Protein GI160898848 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000101416 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000615359 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGAACATGC CCCGTGAATC AGCCATCGAG CGCGCCGACC GCAAGAACCA CAAGGCTGCC 
GGCCGCCTGC TGCTGAAGTT TGTCAGCCCG GGGCGAAACG GCATGCCCGA TGACATTTTG
CTCAACCCTA TCCCGCCAGA GCACCAAGAA CTGGTGGCCC GATATTTCCG CTTCGTTGAA
TACAAGAAAC CGAAAGCGAC GCCGCGAGCC GACCAATTGC GCCGCCACGC TGAATTGCGC
GCGTTGGGTT TTACTGTCGA TGTGATCGAC AGCCAATCAG CATAA
 
Protein sequence
MNMPRESAIE RADRKNHKAA GRLLLKFVSP GRNGMPDDIL LNPIPPEHQE LVARYFRFVE 
YKKPKATPRA DQLRRHAELR ALGFTVDVID SQSA