Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3147 |
Symbol | |
ID | 5748731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 3463202 |
End bp | 3465337 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641298250 |
Product | TonB-dependent receptor |
Protein accession | YP_001564170 |
Protein GI | 160898588 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.116125 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00000946048 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGGCGA CCTTTGAAAA ATACGAATCA TTCTCATCAA AGGAAGATGC TGTGAAGCTG TGTTTCCATC GCAGGCTCCC GTCCCGGGCG GGCGCCATCG CACTCTCTAC CCTGATGGCG CCGGCCGGCG CCTTCGCTCA GGGCACGTCG GGTTCCGGGG GGGAATCCAA CGCGCTTGAA GCGGTCGTGG TCAGCGGAGA AAAGGTCAGG CGCGAACTCA AGGACACGGC CTCCTCCGTG TCGGTCAAGG CCGGCAAGGA CCTGGCCCGG CAGGAGTCCG GCAATGCCTC GGTCCACGAG GTGCTGCACG ACGTGCCCAA CGTGGTCTAC ACCGACACGG TGGGCGCGCC CATCATCCGC GGGCAGGACA CGCAGGGCCC CAACAACGGC CAGAACGTCT TTTGGGGCGG CACGGTGCCG CGCGCCACCA TCAACCTGGA TGGGCACTAC CTCAACTACA ACGAGATGTT CTTCGGCGCG ACCTCGGTCT GGGATGTGGA GAGCATCGAG GTGTTCCGCG GCCCGCAGAC CACCTCGCAG GGCGCCAATG CCATTGCGGG CGCCATCGTC GTGAACACCA AGGACCCCAG CTTCAAGCGC GAAGGGGCCT ACCAGCTGGA GGCGGGCGAC TACCACTCGC GGCGTGCGTC CATCGCCGTC TCCGGCCCCG TGGGCGAGGA GCTGGCCGCG CGGCTGGCCG TGGACTACTC GGGGCGCGAT ACCTTCATCG ACTACACCAA TCCGCAGTTC CAGCGAGGCC AGGCCGATCA GGATTTCCGC GCGCTGAATG CACGCATGAA GTTCCTGTGG CTGCCCAGCC GCATTCCGGG CCTGGAGGCC AAGTTCACCT ATTCCCACAA CGACAGCAAC CGTCCCAGCC AGGAGGCGGC GTCCGCTCCG TTCACCGCGC TGGAGCACTG GACGACGACC ATGCCCAGCT GGAAGCAGAA GACCGACACC GGCATCCTCG ACCTCAGCTA CGAGCTGGGC AACGGCGTGC GGCTGGTCAA CCAGTCCCAG TATTCGCGCT CGTCCGTGCA GCGCTATACG GGCATTCCCG GCGAGGGCGA TGCCGATATC CGCCAGAACA ATGTCTCCAA TGAGTTCCGC GCCCTGGTGG GCAGCGACAA GGACCGCCTG AGCGGCTTCG GCGGCGTCTA CTACGCGCGC ACCGGCACGG ACGAAAGCCT GCTGCTGCGC GGCCTGTCCG CCTTCGACGA CACGAAGAAG AACCTGGGCG TCTTCGGCGA GCTGAACTGG CGCCTGGCCA ACCGCTGGAC CCTGACCAGC GGCCTGCGCT ACCAGCAGGA CGAGGTGGTG CGCACCGGCA CTTCGGTGCT GGCACCCACC GCCCTCGACT ACACGAAAAC CTTCTCGGCC CTGCTGCCCA AGCTGTCCCT GGCCTATGCC GCCACACCGC GCTGGACCGT GGGCGCGCTG GTCAGCCGGG GCTACAACCC GGGCGGTGTG TCGCTGAACC TCACCAGCCG GCAGTGGGCG TATTTCAAGA AGGAGTCGAT CTGGAACTAC GAGCTGTTCA GCCGCGCCAG CCTGCTCGAT GACCGGCTGA TGCTCAACAC CAACCTGTTC TACATGGACA TGCGGGACGC GCAGTACAAC ATCCCCGTGG TCATCTCCCC GGGCGTGGCC CAGTCCTACA CCATCAACGC GGAGAAGGCC CATGCCTACG GCTTCGAGCT GGGCGCCGAC TACCGCGCGC TGGACAACCT GCGGATCAAG GCCGGCGTGG GCGTGCTGCG CACCCGCATC GAGGAGATGG GCAGCAACCC CGGCTACGAG CACAACCGCT TCGCCCGCTC GCCCGGCTAC AACCTGAGCC TGGGCGTGAG CTGGGACGCC AGCCCCCGGT TCAATGTCTC CGGCCAGGTG CGCCATCTGG ACGGCTACTA CTCCGATACC GCCAACACGC GCGCCTATGC GGTCGGCTCC AACACCATCG CCGACCTGCG CATGACCTAT GCCTACAGCG CGCGCGTGCA GCTGTACGGC TATATCAAGA ACGTGTTCGA CAGGCGCGCA CCGACGTACC TGCAGCAAAA CCGGGGCATC GGCGGCATCG AGGCCAGCAT GACCGCGCCG CGCATGATCG GCGTGGGCGT GCGCGGAACG TTCTGA
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Protein sequence | MMATFEKYES FSSKEDAVKL CFHRRLPSRA GAIALSTLMA PAGAFAQGTS GSGGESNALE AVVVSGEKVR RELKDTASSV SVKAGKDLAR QESGNASVHE VLHDVPNVVY TDTVGAPIIR GQDTQGPNNG QNVFWGGTVP RATINLDGHY LNYNEMFFGA TSVWDVESIE VFRGPQTTSQ GANAIAGAIV VNTKDPSFKR EGAYQLEAGD YHSRRASIAV SGPVGEELAA RLAVDYSGRD TFIDYTNPQF QRGQADQDFR ALNARMKFLW LPSRIPGLEA KFTYSHNDSN RPSQEAASAP FTALEHWTTT MPSWKQKTDT GILDLSYELG NGVRLVNQSQ YSRSSVQRYT GIPGEGDADI RQNNVSNEFR ALVGSDKDRL SGFGGVYYAR TGTDESLLLR GLSAFDDTKK NLGVFGELNW RLANRWTLTS GLRYQQDEVV RTGTSVLAPT ALDYTKTFSA LLPKLSLAYA ATPRWTVGAL VSRGYNPGGV SLNLTSRQWA YFKKESIWNY ELFSRASLLD DRLMLNTNLF YMDMRDAQYN IPVVISPGVA QSYTINAEKA HAYGFELGAD YRALDNLRIK AGVGVLRTRI EEMGSNPGYE HNRFARSPGY NLSLGVSWDA SPRFNVSGQV RHLDGYYSDT ANTRAYAVGS NTIADLRMTY AYSARVQLYG YIKNVFDRRA PTYLQQNRGI GGIEASMTAP RMIGVGVRGT F
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