| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2478 |
|---|
| Symbol | |
|---|
| ID | 5748041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2738595 |
|---|
| End bp | 2739554 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641297560 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001563501 |
|---|
| Protein GI | 160897919 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.383615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGCA GCACTGCGTT GCCCTACACG GGGGTAGTGC ACGGGGGCCT GCATGGGCGG
TGGGCGGACA GCGCCTACAC TCACGCCCTC ATGTTCCAGC CTTCATCCAT CCCCTCCCCG
GCCCAGCCGC CAGAGCCCGA CGACGCGCCG CTGCACATCC TCTGGCGCGA CGAGCATCTG
GTGGCGGTGT ACAAGCCCGC AGGCTGGCTG GTGCACCGCA CGGGACTGGA CGCGCATGAG
ACGCGCTTTG TGCTGCAGAC CCTGCGCGAC CAATTGGGCT GCCATGTGTA CCCCGCGCAC
CGGCTGGACA AGGGCACCTG CGGCGTGCTG GTCATGGCCT TGCATGCCCA GGCCGCCCAG
CGGCTGGGCC AGGCCTTTGC CGGGCAGGAA GTGCGCAAGC AATACCTGGC GCTGGTGCGG
GGCTGGCTGC CGGATGCGGT GGAGGTGGAC CACGCGCTCA GGCCCGACGA TGCGCCCGAG
GACGCGCCAG CCCAGCCCGC ACAGACTTCG CTGCGCTGCC TGGCGCGCCT GGAGTGGCCC
GAGGCCTTTG ACCCGCGCCA CGCGGCCACA CGGATTTCAC TGGTCGAGGC CCTGCCCGCC
ACGGGCCGGC GCCACCAGAT ACGCCGCCAT CTCAAGCATG TGGCCCATCC CATCATTGGC
GACGCCACGC ATGGCAAGGG GCCGCTGAAC CGCTGGTGGG CCGAGCGGCT GGGCCTGCAG
CGGCTGTGGC TGCACGCCCA TGCGCTGGAG CTGGCGCACC CGATGACGGG CGAGCCGCTG
CGCTTCGAGG CCGACTGGCG GCAACTGGGC CATGTGGCCG ATGTGCAGCA CTGGCGCGCG
CTGTGCGCCC TGCCCGGCTG GCAGGCCTGT GCGGGCCTGC CGGCGACGGC CCGGCCGGAT
CAGACAGCTT CGGCTGGCGC GCCCGGTTCA GGCTGCTCCA TCAGCGGCGC TGCCACGTAG
|
|---|
| Protein sequence | MAGSTALPYT GVVHGGLHGR WADSAYTHAL MFQPSSIPSP AQPPEPDDAP LHILWRDEHL
VAVYKPAGWL VHRTGLDAHE TRFVLQTLRD QLGCHVYPAH RLDKGTCGVL VMALHAQAAQ
RLGQAFAGQE VRKQYLALVR GWLPDAVEVD HALRPDDAPE DAPAQPAQTS LRCLARLEWP
EAFDPRHAAT RISLVEALPA TGRRHQIRRH LKHVAHPIIG DATHGKGPLN RWWAERLGLQ
RLWLHAHALE LAHPMTGEPL RFEADWRQLG HVADVQHWRA LCALPGWQAC AGLPATARPD
QTASAGAPGS GCSISGAAT
|
|---|
| |