| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2072 |
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| Symbol | |
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| ID | 5747633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2267000 |
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| End bp | 2268478 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641297154 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001563097 |
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| Protein GI | 160897515 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00565214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.624153 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTGCA AGAACATCTC GACGGCCGGA GCAACACCGC TGCAGCGCGC GGTCTGGACA
CTGTGCGGCA GCATGGCCTT GCTGGCATTG CCGCCAGCGG TGTCGGCGCC TGCGGACACC
GCTGGCGTCC AGGGCATGCA CGCCCCCGGC GCCGGGGACA TGCCCTCTGG CGACTCCCTG
CAGCTGGTGG CCGGACGCCA GCACCTGATG CCGCTGGCCA GTACTCCGGG CCGCATCGCC
GTGGGCGACC CCAATGTGCT GGACGTGAAA CTGCTACGCG CCACGCCGGG CTCCGGCGCC
GGCGCCGGAG GAACCGAGCT GCTGCTCACG CCCAAGGCCC AGGGCAGCAC CACGTTGGTG
GTGTGGCCCC AGAAAGGTGG CGCACCCCAG CGCTGGGAGG TCCAGGTCCG CGGCCAGCAC
CTGCTGCTGG AAAAGCGCCT GACCTCGGTT CCAGAACATG CCCAGGCCGT GGCCGAACTG
CGCCAGTACG CGCCCGCCCA GACGCTGCTG GTGGACAACG CGCAGATCGA CGTCAAGAGC
AACACCGTTC AGGTGGACGT GCAGGTGGTG GAGTTCAAGA AATCCGCGAT GAAGCGCATC
GGCGTCAACA TCTACAGCGG CGGGCGCAAC AACCAGGGCT TCAGCTTCGG CAGCTTCAGC
CCCGGCGTGG TGGGCAGCAT CAGCACCAAT ACCAACGGCA CGGGGACAGG GACGGGAACG
GGCAATACCG GCACGGGAGG CACGGGCTCG GGCGGCGTGT CCAACAACAC CTCGTCGGCC
ATTGCCAGCG CCATGAGCCT GGTGATGACC TTCGGCAAGG CCTTCAGCGG CGCCGGCATC
GTCACGCAGC TGAGCATCCT CGAAGGCAAC GGCATGGCGC GCGTGCTGGC CCGGCCTACC
CTGCTGGCCC AGACCGGCCA GAACGCCAGC TTCCTGGCCG GTGGCGAGCT GCCGATCCCG
GTGCCCGCGC GCGACGGCAA CATCGCCATC CAGTACAAGG AATTCGGCAT CAAGCTGCAG
CTGACGCCCA CCATCCTGTC GGACGATCGC ATCGCCCTGA AGGTCTCTCC CGAGGCCAGC
GACCTGGACT TCAACAGCGG CGTGACCATC AGCGGCGTCA CCGTGCCCGC CATCCGCACG
CGCCGCGCCG ACACCTCGGT GGAGCTGGCC GATGGCGAGA GCTTCGTCAT CGGCGGGCTG
GTCAGCCGTG CCACCACCTC CAACGTCAGC AAGGTGCCGG TGCTGGGCGA TCTGCCCATC
CTGGGCACCT TCTTCAAGAA CCTCAACTAC ACGCAGGAAG AGTCCGAGCT GGTGATCATC
GTCACCCCGC GCCTGGTCCA CCCGCTTCCC GCCAGCACCA ATCTCGAAGC CCTGCTGCCC
GGTGCGCAAT CCGAGCAGCG CAACGCCGGC AAGGTCTGGC TGCCCTACCT CGCCGGCGGA
ATGAGCACCC AGACCGCCGT ACCCGGCTTC TCGTACTGA
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| Protein sequence | MKCKNISTAG ATPLQRAVWT LCGSMALLAL PPAVSAPADT AGVQGMHAPG AGDMPSGDSL
QLVAGRQHLM PLASTPGRIA VGDPNVLDVK LLRATPGSGA GAGGTELLLT PKAQGSTTLV
VWPQKGGAPQ RWEVQVRGQH LLLEKRLTSV PEHAQAVAEL RQYAPAQTLL VDNAQIDVKS
NTVQVDVQVV EFKKSAMKRI GVNIYSGGRN NQGFSFGSFS PGVVGSISTN TNGTGTGTGT
GNTGTGGTGS GGVSNNTSSA IASAMSLVMT FGKAFSGAGI VTQLSILEGN GMARVLARPT
LLAQTGQNAS FLAGGELPIP VPARDGNIAI QYKEFGIKLQ LTPTILSDDR IALKVSPEAS
DLDFNSGVTI SGVTVPAIRT RRADTSVELA DGESFVIGGL VSRATTSNVS KVPVLGDLPI
LGTFFKNLNY TQEESELVII VTPRLVHPLP ASTNLEALLP GAQSEQRNAG KVWLPYLAGG
MSTQTAVPGF SY
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