| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0425 |
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| Symbol | |
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| ID | 5745185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 539001 |
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| End bp | 539975 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641291537 |
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| Product | NifR3 family TIM-barrel protein |
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| Protein accession | YP_001557551 |
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| Protein GI | 160878583 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0176336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTTTTA CCATAGGAAA TGTAAATATA AACGGTAATT TGGTACTAGG GCCAATGGCA
GGTGTTACAG ACCTGCCGTT TCGTCTCTTA TGTAAAGAGC AAGGGGCTGA CTTGATTTAT
ACAGAAATGG TCAGCGCGAA AGGGATTTAT TATAACAATA AAAATACAGA GGTACTTCTT
GAAGTAGAAG AGAAGGAGCG TCCTGTTGCT TTACAATTAT TTGGAGAAGA TCCCTATATT
ATGAGTGAAA TGGCAAAAAG GATTGAACAT CGTAATTTTG ACTTTCTCGA TATTAATATG
GGATGTCCAG TTCCGAAAGT AGTAAATAAC GGAGAAGGAT CTGCACTTAT GCTAAAGCCT
GAAAGAATTG GTGAGATCGT AAGTGCAATA AGTAAAGCAA TTAAAAAGCC TGTTACAGTA
AAAATAAGAA AAGGTTTCAC GAAAGACAAT ATTAATGCAG TTGAGGTTGC AAAGGTAATT
GAACAAAGTG GTGGAGCTGC AATCGCGGTT CATGGAAGAA CTAGAGAGCA ATATTACAGC
GGCGAAGCTG ACTGGGATAT CATAAAAGCA GTAAAAGAAG CGGTTTCCAT ACCTGTTATA
GGCAATGGTG ATGTACAAAC GCCAGAGGAT GTAAAAAGAA TGATGTCCTA TACCGGTTGT
GATGCTGTCA TGATTGCACG TGGTGTTCGT GGGAATCCTT GGTTTTTCTC GCAAGCAAAA
CATTATCTTA ATACAGGCGA GATTTTAGCA AAACCTAGTG TTCCTGAAGT AATTGAAATG
ATATTACGTC ATGGTAGATT AGCGATTGAA GTTAAGGGTG AATTTACTGC AATGCATGAG
ATGAGAAAGC ATGTAGCTTG GTACACCATG GGATATCCAA AGTCTGCGAA GTTAAGAAAC
CAAGTCAATG AGATCGAGAC ATATGAAGAC TTGATAGTCC TTATGAAGAA GTATGAAGAA
ATGCTTGATC TCTAA
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| Protein sequence | MSFTIGNVNI NGNLVLGPMA GVTDLPFRLL CKEQGADLIY TEMVSAKGIY YNNKNTEVLL
EVEEKERPVA LQLFGEDPYI MSEMAKRIEH RNFDFLDINM GCPVPKVVNN GEGSALMLKP
ERIGEIVSAI SKAIKKPVTV KIRKGFTKDN INAVEVAKVI EQSGGAAIAV HGRTREQYYS
GEADWDIIKA VKEAVSIPVI GNGDVQTPED VKRMMSYTGC DAVMIARGVR GNPWFFSQAK
HYLNTGEILA KPSVPEVIEM ILRHGRLAIE VKGEFTAMHE MRKHVAWYTM GYPKSAKLRN
QVNEIETYED LIVLMKKYEE MLDL
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