| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1124 |
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| Symbol | |
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| ID | 5710004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1180673 |
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| End bp | 1182484 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641275624 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001540942 |
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| Protein GI | 159041690 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000816424 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.578001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAATCTG ACTTAGAATT CTCCAATATT GTATCCGTAC TTAAGTTAGT GGAGGCTACA
ACGCAGAGGA CTGTTATGGC TAAGGCACTC TCAAGCCTAC TTGCTAAAAC GCCACCACAG
GTCATTGATA AGGTCATATA CTTCCTACTG GGTAGCCTTA GGCCTGACTG GGAGGGTGTG
GAGCTTGGTT TAGCTGAAAG GCTAACACTT AGGGCAATAT CCATGGCCAC TGGCTTACCT
ATCAGGCAGG TTGAGGAATT GTATAAGAAG CTTGGTGATG CAGGTGAGGT GGCTAAGAGG
GCTGCGGAGA TTAAGAGGAG TAAGGGGGGT GGTGGCACTA TATTCGACTT CATTGACACT
GGACCTAAGA GGAGGCTAAC GATCAGTAAG GTCTACGACA CTTTAATGGC CATAGCAAAG
GCATCTGGGG AAGGAGCCCA GGACACTAAG GTTAAGTTAC TGTCAAGTCT ATTAACTGAT
GCCGAACCCG ATGAGGCTAA GTACATTACT AGATTCGTCA TAGGGAGGTT AAGATTGGGG
GTGGCTGACA TGACTATTCT AGATGCCTTA TCAGACGCCT TTGATGTTAA TAGGGATTTA
CTGGAGAAGG CTTACCACGT TTACCCGGAC CTCGGTAAGA TAGCTAAGAC ACTGGCTGAG
GGGGGTGAGG AGGCTGTTAA GGCGATTAAG GTTACGCCTG GTGTACCTAT ACAGCCTATG
CTTGCTGAGA GGTTAAGTAG CCCTAAGGAG ATTTTGAATA AGCTTGGTGG GGTTGCCATA
TGTGAGTTTA AGTATGATGG TGAGAGGATG CAGATACATA AGCTTAAGGA TGGTACTGTT
AAAATATTCA GTAGGAGGAT GGAGGATATA ACTAACCAGT ACCCTGATGT AGCCGAGTAC
GCCCGTGAGG CAATTGATGC TGAGGAATTC ATAGTTGAGG GTGAGGGTGT TGCAATTGAC
CCGGATACAG GGGAGTTTAA GCCGTTTCAG GAATTAATGC ATAGGAAGAG GAAGCATAAT
ATTAAGGAGG CTATTGAGGA GTACCCCATT AACCTATACT TATTCGACGT AATGTACGTT
AATGGACAGG ACTTAACAGA CCTACCTCTA CCCGATAGGA AGAAGGTACT GTTCTCAATA
ATTAAGCCAC ATGAGCATGT TCACCACGCC GACTGGATAA TAACCGATGA TGCGGATTCA
CTGGAGAAGT TCTTCCTGGA CGCAATATCG TCAGGTTGTG AAGGCGTCAT GTGTAAGTCA
GTTAAGTTAG GCTCAGTCTA TGAAATGGGG GCTAGGGGTT GGTTGTGGAT TAAGTATAAG
AGGGATTATA AGAGCGAGTT ATCAGACACA ATGGATCTAG TGGTGGTTGG GGCATTCTGG
GGACGCGGTA AGAGAGCCGG AACCTATGGT GCACTCCTCC TAGCCGCATA CGACCCTGAC
TCTGATCAAT TCTACACAGT ATGCAAGGTT GGGAGCGGCT TCACTGATGA GGATCTAAAG
AAGCTGCCTC AAATGCTTGA ACCATATAAA ATACCGCATA GACACCCCAG GGTTGTTTCG
AAAATGGAGC CGGACATATG GTTCACACCA GGCCTAGTGC TGGAGATAAC CGGCGCGGAG
ATAACCATGT CCCCACTCCA CACTTGTTGC TCCGTCATGC TTAAGGGTGA CGTGGGGTTG
GCTATAAGGT TCCCAAGGTT CACAGGTAGG TATAGGACTG ATAAGAGGCC GGAGGATGCA
ACAACGGTTA AGGAGATATT TGAAATGTAC AGTAATCAGA AGAAGGTTAA GTTAACTGAT
CAAGTGCCTT GA
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| Protein sequence | MESDLEFSNI VSVLKLVEAT TQRTVMAKAL SSLLAKTPPQ VIDKVIYFLL GSLRPDWEGV
ELGLAERLTL RAISMATGLP IRQVEELYKK LGDAGEVAKR AAEIKRSKGG GGTIFDFIDT
GPKRRLTISK VYDTLMAIAK ASGEGAQDTK VKLLSSLLTD AEPDEAKYIT RFVIGRLRLG
VADMTILDAL SDAFDVNRDL LEKAYHVYPD LGKIAKTLAE GGEEAVKAIK VTPGVPIQPM
LAERLSSPKE ILNKLGGVAI CEFKYDGERM QIHKLKDGTV KIFSRRMEDI TNQYPDVAEY
AREAIDAEEF IVEGEGVAID PDTGEFKPFQ ELMHRKRKHN IKEAIEEYPI NLYLFDVMYV
NGQDLTDLPL PDRKKVLFSI IKPHEHVHHA DWIITDDADS LEKFFLDAIS SGCEGVMCKS
VKLGSVYEMG ARGWLWIKYK RDYKSELSDT MDLVVVGAFW GRGKRAGTYG ALLLAAYDPD
SDQFYTVCKV GSGFTDEDLK KLPQMLEPYK IPHRHPRVVS KMEPDIWFTP GLVLEITGAE
ITMSPLHTCC SVMLKGDVGL AIRFPRFTGR YRTDKRPEDA TTVKEIFEMY SNQKKVKLTD
QVP
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