| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0109 |
|---|
| Symbol | |
|---|
| ID | 5709461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 133817 |
|---|
| End bp | 135649 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641274615 |
|---|
| Product | DNA topoisomerase type IA central domain-containing protein |
|---|
| Protein accession | YP_001539953 |
|---|
| Protein GI | 159040701 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01057] DNA topoisomerase I, archaeal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000681889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGT TAATTGTTGC TGAAAAGAAC AGTGTGGCTA AGGCTATAGC CCAATACTTA
GCTGAGGGTG GATACACATT AAGGAGAATT GGTATTGTAC CCGTCTACTT CTTTAAGGTT
AATGGGGAGT ATTGGGCATC CATGGGCCTA AGGGGGCATA TCCTTGACTT CGACTTTGAA
CACTCCTATA ATAATTGGAA CAGAGTGGAG CCGGGTAAGC TCCTTGACCT TGAGCCAGTA
ATGGTGATTA GGGGTTGGGA TAGGCCGTAC GTAACGGCGT TGGTTGAATT ATCGAAGCAG
GCTAGGGAAA TTATCCTCGC CCTAGACTCT GATGTTGAGG GTGAGGCAAT AGCCTACGAG
GTAATGCTTG TGACTAGGCT TAGGAAACCC ACCTTAAGGT TTAGGAGGGC ATTATTCTCA
GCGGTCACTA GGGATGATAT TAGGAGGGCA TTCAGTAAGT TAACAACAAT CAACGTTAAC
CTTGCTAGGA AGGTCTTCAC CAGAATGGTT ATTGACCTTA AGTACGGTGC AACATTCACT
AGGCTATTAA CCTTAAGCGC CAAGTCAAGT AAGGCGCCAT TAAATAGGGG TGAGTTCCTA
AGCTACGGCC CCTGTCAAAC ACCGGTGCTT AACCTAGTTG TTCAAAGAGC CTTGGAGAGG
GAGAATTTTA AGCCTGAGGT TTACTATAAG ATTAAATTAA TCATTGAGGC TAACGGTGAG
TTAATTGAAT TAGAGTCCAT TGATAAGTTT AAGAACCTTA AGGAGGCCCA GGAGGCGCTT
AGTAGGGTTA AGGCAGGTAA GGCGGTGGTT AAGAATATTG AGGCTAAGAG GGTTCACGTT
AATCCACCTA AGCCCCTTGA AACCGTGGAG CTTGAGAGGA GGGCTAGTAG ATTCCTCAAC
ATTAGGAGTA AGCAGACCCT TGATGCAGCA GAGGAGCTTT ACAGGCAGGG TTACATATCC
TACCCAAGAA CTGAAACCAA CATTTACCCA CCCACCCTGG ATTTAAGGGG TATTTTAAGG
AACCTAACCT CAACGTCAAC CTACGGTCAA TACGCAAGGC ATCTACTGGC TGGTGAATTA
AGGCCTACTG CAGGTAAGGA TAATGATAAC GCCCACCCGC CAATACACCC GGTTAAGGCT
GCTGATAAGC CTGAGTTAAT GGCTAGGTTC AGGGACTTTA AGTACTGGCT CATATACGAC
CTGGTGGTTA GGCATTTCCT AGCAACCCTA AGTCCCCCAG CCTTAATTGA GGAGCAGAGG
CTTACTGTTG ATGCTGGTGG AGTACTCTTC GAGGCTTCAG GCCTCAGGAT CATTAATGAC
GGCTACTTCA CGATTTACCC CTTCGAGAGA CCTAGGGCTA ATCCACTACC CTTAAGCGCA
TTAAGGATTG GTATGCAGGT CACTGTTAAG GATGCTAAGG TTGTTAAGAG GAAGACCACG
CCGCCACCCT ACTTAAGTGA ATCAGAGTTG CTTAGGTTAA TGAGGAAGTA CGGTATAGGT
ACAGACGCCA CTATGCAGGA CCACATACAT ACTAACGTTA AGAGAAGGTA CTTCAAGATA
ATTAAGGGGC AGTGTGTACC CACACCGCTT GGTAAAGCGT TAATAACCTC ATTATCCAAG
TACGCACCAA CGTTAATAGA CCCAAACTTC AGGAGTAGGA TGGAGTCCAT GCTTTCACTC
ATTGGTTCAG GGAAGGAGAT GCCTGACTCA GTGAGGAGGA GGCTTGAGGA GGAGGCCGCT
AGGGTTTACA CCTCAATGAA GCCTAATTCT AATCAACTCG GGGAAGAATT AGCTAAGGCG
TTGAGAAGCA TGGTTAATGA AAAGGGCGCT TAA
|
|---|
| Protein sequence | MDKLIVAEKN SVAKAIAQYL AEGGYTLRRI GIVPVYFFKV NGEYWASMGL RGHILDFDFE
HSYNNWNRVE PGKLLDLEPV MVIRGWDRPY VTALVELSKQ AREIILALDS DVEGEAIAYE
VMLVTRLRKP TLRFRRALFS AVTRDDIRRA FSKLTTINVN LARKVFTRMV IDLKYGATFT
RLLTLSAKSS KAPLNRGEFL SYGPCQTPVL NLVVQRALER ENFKPEVYYK IKLIIEANGE
LIELESIDKF KNLKEAQEAL SRVKAGKAVV KNIEAKRVHV NPPKPLETVE LERRASRFLN
IRSKQTLDAA EELYRQGYIS YPRTETNIYP PTLDLRGILR NLTSTSTYGQ YARHLLAGEL
RPTAGKDNDN AHPPIHPVKA ADKPELMARF RDFKYWLIYD LVVRHFLATL SPPALIEEQR
LTVDAGGVLF EASGLRIIND GYFTIYPFER PRANPLPLSA LRIGMQVTVK DAKVVKRKTT
PPPYLSESEL LRLMRKYGIG TDATMQDHIH TNVKRRYFKI IKGQCVPTPL GKALITSLSK
YAPTLIDPNF RSRMESMLSL IGSGKEMPDS VRRRLEEEAA RVYTSMKPNS NQLGEELAKA
LRSMVNEKGA
|
|---|
| |