Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3460 |
Symbol | hemN3 |
ID | 5712518 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3641425 |
End bp | 3642588 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641269389 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001534794 |
Protein GI | 159046000 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGATT GGCAACACGG GGGCTTCGGG CTGTACCTTC ATTGGCCTTT CTGCGCTGCC AAGTGCCCCT ATTGCGACTT CAACAGCCAT GTCAGGGCAC GCGTGGATCA AGCAGCGTGG GAAAACGCCT TCTTGTCGGA AATCGGCCGT GCCGGAATAG AAACGGAAGG TCGCCGCCTC GATACGGTTT TTTTCGGCGG AGGCACCCCT TCATTGATGG AACCGGACCT CGTGGCTTCC ATCATCGACA GGATCCGGCG AACTTGGCCC ACCTCCAACA GTCTTGAAAT CACACTGGAG GCAAACCCCA CATCCGTCGA GGCCGGGCGG TTTCGCGCCT ATCGGGATGC AGGGGTGAAC CGGGTTTCGA TGGGTATCCA GGCCCTGAAC GACGCGGACC TGAAGGCTTT GGGACGATTG CACTCGGTCA AGGAGGCGCA AAGCGCATTT GAGGTCGCGC AAGCGCATTT CGAGCGCGTG AGCTTCGATC TGATCTACGC ACGACAAGGT CAAACGCTGG AAGCCTGGAT TGCAGAGCTT AGGGCAGCTC TCTCCATGGC GATTGATCAT CTTTCTCTCT ATCAGTTGAC CGTGGAGCCA GGCACCGCGT TTGGAGATCG CGCTGCTCGG GGCATGTTGC GCGGATTGCC GGATGGTGAC TTGGGCGCCG ACATGTTCGA AGCAACCCAA GACCTGTGTT CCGATGCGGG AATGCCGGCC TACGAAGTGT CGAACCACGC AGCTGAGGGC TGCGAATCCC GCCATAACCT GATCTATTGG CGGTATGGGG ATTACGTTGG CATCGGCCCG GGCGCCCATG GGCGCCTTAC CCTATCCGGA CAGAAATGGG CCACCTCCAC CCCGTTGCAC CCCGAAGCTT GGCTGGCTCA AGTTCAGGAT AGCGGGCATG GCGAAACTCC AAGGCAGCTT CTGACACCGA ATGAGATCTC CGAAGAGCTC CTGCTCATGG GCTTACGGCT GTCGGAGGGT GTGTCTCTGA ACCGGATCAC CGCTATCGCC GGAGCACCTC TGCCGGAACG AAAACTCTCC GAACTCCAGG AAGCGCAACT CATACGGGTG GACGGCGACC GGTTGCGCAC CACTTTACAA GGGCGCATGG TGCTGAACGC CATTCTGCGG GAACTTCTGA GCGAGGACAG ATGA
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Protein sequence | MEDWQHGGFG LYLHWPFCAA KCPYCDFNSH VRARVDQAAW ENAFLSEIGR AGIETEGRRL DTVFFGGGTP SLMEPDLVAS IIDRIRRTWP TSNSLEITLE ANPTSVEAGR FRAYRDAGVN RVSMGIQALN DADLKALGRL HSVKEAQSAF EVAQAHFERV SFDLIYARQG QTLEAWIAEL RAALSMAIDH LSLYQLTVEP GTAFGDRAAR GMLRGLPDGD LGADMFEATQ DLCSDAGMPA YEVSNHAAEG CESRHNLIYW RYGDYVGIGP GAHGRLTLSG QKWATSTPLH PEAWLAQVQD SGHGETPRQL LTPNEISEEL LLMGLRLSEG VSLNRITAIA GAPLPERKLS ELQEAQLIRV DGDRLRTTLQ GRMVLNAILR ELLSEDR
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