| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3316 |
|---|
| Symbol | serB |
|---|
| ID | 5712373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3478598 |
|---|
| End bp | 3479476 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641269244 |
|---|
| Product | phosphoserine phosphatase |
|---|
| Protein accession | YP_001534650 |
|---|
| Protein GI | 159045856 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.979977 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTTG CCACCCTGCT GACCGATCCT GCCGCGCCCG CGCTGGAGGA GGCGATGGTC
ACCGCCCTGC GCGATGCCTG GGGCGGGGGC GATGCGCGGT GGTTGGCCGC GGGGGAGGCG
GCGGAGTTTC CGCTGCAGGA GGTGCCCGGC AACCTGTGGC AGGTTTGGGC GGACTTGCAG
GGCCAGCGCG TCGATCTGGT GGTGCAGCCC GCGGCGGGGC GGCGCAAGGC GATGCTGCTG
GCCGATATGG ACAGCACCAT GATCCGGCAG GAGTGTATCG ACGAGTTGGC CGATGAGGCC
GGGGTCGGGC CGCGCGTCGC CGAAATCACC GCGCGCGCGA TGAATGGCGA GCTGGATTTC
GAGGGTGCAC TGCGGGAGCG GGTCGGGCTG CTGGCCGGGC TGGATGCGGC GGTGATCGAC
CGGGTTCTGG AGACGCGGAT CGATCTGATG CCGGGGGGGC GGGCGCTGGT GGCGACGATG
AAGCGGGACG GGGCCTATGC GGCGCTGGTC TCGGGCGGGT TCACGGCGTT CACAGCGCGG
GTGGCGGCCC TGTTGGGGTT CGACGAGAAT CGCGCCAACA CGCTGGAGAT CGTGGACGGG
GTGCTGACCG GCCGGGTGAT CGAGCCGATC CTGGGTCGGG CGGCGAAGGT CGCGGCCCTG
GAGGAGATCA CCGCGCGGCT GGGGATTTCG GAGGCGGATG TGATGGCCGT GGGCGACGGC
GCCAATGATC TGGGGATGCT GGGCCGGGCG GGGGCGGGCG TGGCGCTCCA CGCCAAGCCA
GTGGTGGCCG CGGAATGCGA CCGGCGGATC AATTTCGGCG ATCTCAGCGC GCTGCTGTTC
CTGCAGGGTT ACAGCCGGGC GGATTTCGCG ACGACCTGA
|
|---|
| Protein sequence | MFVATLLTDP AAPALEEAMV TALRDAWGGG DARWLAAGEA AEFPLQEVPG NLWQVWADLQ
GQRVDLVVQP AAGRRKAMLL ADMDSTMIRQ ECIDELADEA GVGPRVAEIT ARAMNGELDF
EGALRERVGL LAGLDAAVID RVLETRIDLM PGGRALVATM KRDGAYAALV SGGFTAFTAR
VAALLGFDEN RANTLEIVDG VLTGRVIEPI LGRAAKVAAL EEITARLGIS EADVMAVGDG
ANDLGMLGRA GAGVALHAKP VVAAECDRRI NFGDLSALLF LQGYSRADFA TT
|
|---|
| |