| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1895 |
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| Symbol | |
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| ID | 5712888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1973861 |
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| End bp | 1976413 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267820 |
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| Product | hypothetical protein |
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| Protein accession | YP_001533238 |
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| Protein GI | 159044444 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0996991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAAC AAACAGTCAC CGACCGCACC CAGATCCTCG GCAGCGGCCA GGCGGACAAG
ATCGTCGCAA CTTCCGGAGC CGACCTGGTG CTGGGACTTG CCGGCGACGA CGTGATCGAG
ACCGGGGGAG GGCGGGACCT GATCTATGGC GATTTCGTCG GTGAGAACCT GCTCGACGGC
ACCGACACCG CCACCAGTTT TGCCCAGTAT GGCGAGACCG GCGCCTGGAC CGTGCGCGAC
GAGGGGGCGG GGCATACCAG CATGTCCCAG TCCATCGACA CACGCGCCGG GGCCACCTAC
GAGATCAGCT TCGAGCTGGC CACGAATTAT GACGCCAATG TCCTGAGCGG CGCGGTGGAG
GTGCTCTGGA ATGGCGAGGT CATCTCGGCC TTCGATACCA ACAGCGCGGT CTTCGCCGAC
CACGTGGTGG GGTTCCAGGG CAATGGCGGT CCGGGGGAGC TGACCTTCCG CTCGGTTGCG
CCCCAAAGCA GCGAGGGCCC CGAGATCTTC ACCGACCTGC CGGTGTTCTA CAGGAAAACC
GAGAAACAGA TCGGCGAAAC GCTGGTCACG GTCAAATCCA TCGCCGAGGG CCAGTCGCAT
ATCTACCAGG TGCTGAACGG CAAGCTGCAC CTTTTCGACC CGGTTTCGGA AAGCTACACG
CCCGCGGGCG CCGAGGCGAC GGTAGTCGTC AATGCCATCG GTTTCAACCA GCAGGACAAC
CTGATCTACG GCATTGCCGT GAAGCCGGGC GAGGATGCCT TGGGCAACGC GGTCGCCGAG
GCGGATCTCG TGATGTATGA CGCCGGTGGC GATGCCTACC GGATCGGCGC GACCCCCTAT
CGCAGCTGGA CCGCCGATAT CGACGCCGAT GGCAACCTTT GGGCGTTTCA TTCCAGCATG
GACCGGGTCA CCCGGATCGA CCTCGATCAG GTCGATGCCG ACGGCAACCC GGTCACCGAA
ACCTTCAAGT TCCCCAAGGA GATGATCACC GATCAGGTCT GGGATGTGGG CTTCGACGCG
GCCAGCAACA CGTTCTACGG CATCGTCAAG CCAAGCGCGG CGGGCCAGCC CGCCAAGCTC
TTCGAGATCG ATATCTCCGA GGTCGCAAGC GGCGGCGCGC CGATCTTCTC CACGACCCCG
ATCGTCGAGA CCGAAGTGGC GGGCCAGATG CTGGAGGGCG TGCCCGCGAT CACCTTCGGG
GCGTTCGTGG TCGATGGTGA CGGAAATCTC TATGCGGGGG GAAATGGCGG CGATCACGAC
ATGAACAGCG CCACCAAGTC GTCGGGCGGC ATCTACAAGG TGCGCACCGA TACCGAGACC
GGCGAGATCA CGCTGGAACT GGTCTCCGAC GCGCCCAAGG CCAACTCCAA TGACGGCGCG
GTGGACCCGC GCACCATGGA CCCGTTTACC GCCAAGGACA GGTCGGCCAC CGTGCTGATC
CGCTCTCCCG AGGTGGTCGC GGCCCCCGAT GACAGCACCA GCTACGACGA TAAGATCCAT
TCCGGCGCGG ATGCCGATAC CGTTCACGGC GGGCTTGGCG AAGACCTGAT CATCGGTGCC
GGACGTGGCG ACACCCTGAG CGGTGGGGCC GATAACGACG CGATCTATGG CGGCGCAGGG
CCGAACAGCA CCGCCACCAT GGTGTCGCGT TATGACGCGG ATGGCACGCG CTATGACCCG
TTCGGCAATG TCCTGCCCGA AGATGACGAT CGGCTTTTTG GCGGCGAGGG CGACGACTAT
CTCAGCGGCT CCGCCGGACA TGACAGCCTT CACGGTGGGG TCGGCAATGA CACGCTCGAC
GGTGGCACCG GGTTCGACAC GCTGTTCGGC GATTCAGGGG ATGACATCCT GTCCGGTGGC
AGCGACCAGG ACACCCTGCA CGGGGGCGCG GGTGCCGACG CGCTCAATGG CGGTTCCGGG
CATGACGTGC TGCATGGCGA TGACGGCGCC GACAACCTGA TCGGCGGCAG TGGCGATGAC
ACGCTCCATG GCGGGGCAGG TGCGGACGAC CTGCGCGGCG GGCCTGGCGC CGATATCCTG
CACGGTGATG GCGGCGACGA CCGTCTCGAT GGCGGCACCG AGGACGACCG CCTCTACGGC
GGGGCGGGGG ATGATTATGT CAAGGGCGCC GCGGGCGACG ACCTGCTCTC GGGCGGCGAC
GGCAAGGACA AGCTGATGGG CTATTCCGGC GCGGATGTGC TCGATGGCGG GGCAGGGGCC
GACCGGCTCT ATCTCGGCGC CGGGGCGGAT ATCGCCACGG GTGGCACAGG CAGCGACCGG
TTCATCTTCC GCGCCGACGA TCTCGACGGC AGCACGGACC GGATCACGGA TTTCCGCAAT
GCGGGAGGTG AGAAGGACCG GCTGGACCTG CGCGGACTGG ATTTGCTCTC GGATGACATG
ACCGCGGATC TGTGGATCGC CACCTACGTG ACCCAGGGCG CGGACCGGAG CGTGACGGTC
GACCTCGGCG CCTGCACGAT CAGTTTCGAG GCCCGGTCGG ACGGCCCGGC GCAGGCGCTC
TACCTGGAGC TTTGCGACGG CATCCTGTTC TGA
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| Protein sequence | MPEQTVTDRT QILGSGQADK IVATSGADLV LGLAGDDVIE TGGGRDLIYG DFVGENLLDG
TDTATSFAQY GETGAWTVRD EGAGHTSMSQ SIDTRAGATY EISFELATNY DANVLSGAVE
VLWNGEVISA FDTNSAVFAD HVVGFQGNGG PGELTFRSVA PQSSEGPEIF TDLPVFYRKT
EKQIGETLVT VKSIAEGQSH IYQVLNGKLH LFDPVSESYT PAGAEATVVV NAIGFNQQDN
LIYGIAVKPG EDALGNAVAE ADLVMYDAGG DAYRIGATPY RSWTADIDAD GNLWAFHSSM
DRVTRIDLDQ VDADGNPVTE TFKFPKEMIT DQVWDVGFDA ASNTFYGIVK PSAAGQPAKL
FEIDISEVAS GGAPIFSTTP IVETEVAGQM LEGVPAITFG AFVVDGDGNL YAGGNGGDHD
MNSATKSSGG IYKVRTDTET GEITLELVSD APKANSNDGA VDPRTMDPFT AKDRSATVLI
RSPEVVAAPD DSTSYDDKIH SGADADTVHG GLGEDLIIGA GRGDTLSGGA DNDAIYGGAG
PNSTATMVSR YDADGTRYDP FGNVLPEDDD RLFGGEGDDY LSGSAGHDSL HGGVGNDTLD
GGTGFDTLFG DSGDDILSGG SDQDTLHGGA GADALNGGSG HDVLHGDDGA DNLIGGSGDD
TLHGGAGADD LRGGPGADIL HGDGGDDRLD GGTEDDRLYG GAGDDYVKGA AGDDLLSGGD
GKDKLMGYSG ADVLDGGAGA DRLYLGAGAD IATGGTGSDR FIFRADDLDG STDRITDFRN
AGGEKDRLDL RGLDLLSDDM TADLWIATYV TQGADRSVTV DLGACTISFE ARSDGPAQAL
YLELCDGILF
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