Gene Dshi_1555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1555 
Symbol 
ID5712699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand- 
Start bp1617231 
End bp1617857 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content64% 
IMG OID641267470 
Productputative transcriptional regulator 
Protein accessionYP_001532898 
Protein GI159044104 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.602269 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.341998 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAGC CCGACAAAGA ACCCAGCCTG ATCCGTCTGC ACCGCGAGAG CGGCGACACC 
ATCCCGGTGG AGCCACTCAA TCTCGGCAGC CGCGTGCGCG ACCTGCGCAA GGCGCGCAAC 
TGGACCCTGG AACAGGCCGC GGGTCAGGCT GGGCTGGCCC GGTCTACCTT GTCAAAAATC 
GAGAACGGCC AGATGTCGCC CACCTACGAG GCGCTCAAGA AACTCGCCGA CGGGCTCGAG 
ATCACCATCC CGCAGCTCTT CACGCCGCCG CGCAAGGCCC AGGTCAACGG GCGCATGGCA 
ATCACCCGTT CCGACGCGGG GGAGGCGCAT CCAACCGCCA CATATGAACA TGAGCTTCTC 
GCCGCAACCC TCACGAAAAA AACGATGTTA CCCTATCGCG CCCGGGTCCG CGCCCGCAAC 
TTCGAAGAGT TCGACGGCTG GGTCCGCCAC GACGGTGAAG AGTTCCTCTA CGTGCTGACC 
GGCGCCATCC GCCTGATCAC CGAATTCTAC GAACCGGTCG AGATGCGCCG CGGCGACAGC 
GCCTATTACG ACGCCTCCAT GGGCCACAAC GTCATCTCCA TCAGCGAAGA TGACGCCAGC 
ATCCTCTGGG TCACGTCACT GGCGTGA
 
Protein sequence
MTEPDKEPSL IRLHRESGDT IPVEPLNLGS RVRDLRKARN WTLEQAAGQA GLARSTLSKI 
ENGQMSPTYE ALKKLADGLE ITIPQLFTPP RKAQVNGRMA ITRSDAGEAH PTATYEHELL 
AATLTKKTML PYRARVRARN FEEFDGWVRH DGEEFLYVLT GAIRLITEFY EPVEMRRGDS 
AYYDASMGHN VISISEDDAS ILWVTSLA