Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1258 |
Symbol | |
ID | 5711816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1304262 |
End bp | 1305005 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267170 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001532601 |
Protein GI | 159043807 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.203668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCAAA CACCGCTGGC ATTGATCACC GGGGGGGCGC AGGGGATCGG ATACGCCTGT GCCGAGGCGC TCGCCGCTGA GGGCGCGCGG ATCATCCTTG CGGACATTCA GGACAGTGTG CAGGAGGCTG CGGCGCGCCT CGGCGGTGCG GGATACCTGT GCGACATGGG GGATGCCGCG GCGGTCGGCG CGTTGTTCGA CCGGATCGAG GCGGAGCACG GCGCGGTCAC CTACCTTGTC AACAACGCGG GGATCGCGGC GCCGGGCGAC TTTCTCGATT ATGATCTGGC GACCTTCGAC CGGGTGCTCG ATATCAACCT TCGCGGCGTG TTCGTGGCCA CCCAGCGGGC CGGGCGCAGC ATGGTGGCAC ACGGCATCAA GGGGGCTGTC GTGAACATGT CCTCTATCAA CGCGCAGGTG GCGATCCCGT CGATTCCGGC CTATTGCGCC TCTAAGGGCG GGCTGATGCA GCTGACGAAG GTCGCGGCCC TTGCGCTTGC CCCCCACGGC ATCCGCGTGA ACGCGGTCGG GCCGGGGTCC ATCGATACCG AGATGATGGC GGGGGTGAAT GCCAACCCGG AGGCCATGAA CATGGTCCTG TCGCGCACGC CCCTGAAACG GGTCGGGACC GCGCAGGAGA TCGCGAACGT GGTCGCATTT CTGTGCTCCG ACAAAGCCAG CTATGTCACG GGCGAGACGA TCTATGTGGA CGGAGGGCGC CTGGGCCTGA ACTACACCTG CTGA
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Protein sequence | MSQTPLALIT GGAQGIGYAC AEALAAEGAR IILADIQDSV QEAAARLGGA GYLCDMGDAA AVGALFDRIE AEHGAVTYLV NNAGIAAPGD FLDYDLATFD RVLDINLRGV FVATQRAGRS MVAHGIKGAV VNMSSINAQV AIPSIPAYCA SKGGLMQLTK VAALALAPHG IRVNAVGPGS IDTEMMAGVN ANPEAMNMVL SRTPLKRVGT AQEIANVVAF LCSDKASYVT GETIYVDGGR LGLNYTC
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