| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1014 |
|---|
| Symbol | |
|---|
| ID | 5710530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1048493 |
|---|
| End bp | 1049401 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641266925 |
|---|
| Product | CBS domain containing protein |
|---|
| Protein accession | YP_001532357 |
|---|
| Protein GI | 159043563 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0266413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA CCTCTGACGG ATCGTCTCCC GCGGCGCAAC GCGCGCAAAC AGACACGGAT
CACCCAGCCA GACCGAACGT GTTCCGACGC GTTCTGGAGG CCCTGAAACC CCCGAAAACA
GCTGAGCACG GCTCCGACGA GCATGGCATG CACCCGGGCG CCACGCCCAG CAGCAACGCC
TTCGGCATCG GCAATCTGCG CCGGATGCGC GTGGTCGACG TGGCGATTCC CCGCGCCGAC
ATCGTGGCGG TGCCCTCGGA CATCACCCTG CCCGAGCTGG TCCAGGTTTT CCGCGACAGC
GGCATGACCC GCCTGCCGGT CTATCGCAAC ACGCTGGATA CGCCCCTGGG CATGGTCCAC
CTGAAGGATC TCGCCCTGCA ATACGGCTTC AACGGCGCGA CCCCGAAATT CAGCCTCAAG
GGTAATTTGC GCCCGGTGCT CTACGCGCCC CCGTCCATGC CCATCGGCGT GCTGCTGCAA
AAGATGCAGA AGGACCGCAT GCACATGGCG CTGGTGATCG ACGAATACGG CGGCACCGAC
GGGCTGGTGA CCATCGAGGA CCTGATCGAA CAGGTCATCG GCGAGATCGA GGACGAGCAT
GACGAACCCG AGGACCGGCT CTGGTCGCGG GAGAAACCGG GCGTCTACCT GGTGCAGGCC
AAGGCGCCCC TGGACGAGCT GGAGCGCGAG CTCAGCGTCT CGCTGATCTC CCCCGGCGAC
GACGAGGAGA TCGACACCCT CGGCGGCCTG GTCTTCAAGC TGACCGGCCG GGTCCCAGTG
CGCGGGGAGG TCATCCCCCA CGAGACCGGG GTCGAGTTCG AAGTGGTCGA CGCCGATCCG
CGCCGGATCA AGCGCGTCCG CGTCCGCAAG AGCCCGCCCC CCGCGCCCCT GGCCCCCGCG
GCGGAGTAA
|
|---|
| Protein sequence | MADTSDGSSP AAQRAQTDTD HPARPNVFRR VLEALKPPKT AEHGSDEHGM HPGATPSSNA
FGIGNLRRMR VVDVAIPRAD IVAVPSDITL PELVQVFRDS GMTRLPVYRN TLDTPLGMVH
LKDLALQYGF NGATPKFSLK GNLRPVLYAP PSMPIGVLLQ KMQKDRMHMA LVIDEYGGTD
GLVTIEDLIE QVIGEIEDEH DEPEDRLWSR EKPGVYLVQA KAPLDELERE LSVSLISPGD
DEEIDTLGGL VFKLTGRVPV RGEVIPHETG VEFEVVDADP RRIKRVRVRK SPPPAPLAPA
AE
|
|---|
| |