| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0334 |
|---|
| Symbol | |
|---|
| ID | 5711586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 320898 |
|---|
| End bp | 322301 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266232 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001531684 |
|---|
| Protein GI | 159042890 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0995263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTCGC TGTCCGGACG GTTCCTGGTG CTGACCATCA TCTTCGTGAT GCTGGCCGAG
GTGCTCATCT TCGTGCCCTC GGTCGCGCGG TTTCGCGAGG ATTACCTGCT GGACCGGCTG
GAACGGGCGC AGATCGCCTC CCTTGCCCTG CTGGCGACGC CCGACGACAT GGTCGCGCCA
GAGCTGGAGG CGGAGCTTCT GGCCAATGCC GAGGTGTTCA ACGTGGTGTT GCGACGGGAC
GAAGTGCGGC AGCTGATCCT GTCGCGTCCC ATGCCGCCGG AAATCTACGG CACCTATGAT
CTGCGCGACC CGTCCGCCTA TGAGCTGATC CGCGATGCGC TGTGGAACAT CGTGATGACC
GAGGACCAGG TGATCCGGGT GATCGGCAAC CCGGTGCGCG GCGCCGGCGA GGTGATCGAG
ATCACCATGC CCACGGGCCC CCTGCGCGCC GCCCTGATCG ATTACGGCAT CCGCATCCTG
ATCCTGTCGG CGGTGATCTC GATCTTCACC GCGGCGCTGC TGTTTCTTGC GGTGCGGCGG
TTCCTGGTCA AACCCATGCG CCGGGTGGTG GACCACATGA CCGCCTATGC CGAGGCGCCG
GAGGATGCGC GCCGGATCAT CATTCCCGAT GCGGGCGTGC GGGAGCTGCG CGATGCCGAG
GCCGCCCTGC AATCGCTGCA GACCCAGCTC ACCACGGCGC TCAAGCAGAA GGACCGGCTG
GCGCAGCTCG GCTCTGCGGT GGCCAAGATC AGCCATGATC TGCGCAATGT GCTGACCGTC
GCACAGCTGC TCGCGGACCG GATGGAACGC TCCGAAGACC CCACCGTGCA GAAGGCCGCG
CCGAAGCTCG TCCGCTCCAT CAGCCGGGCG GTCAATCTCT GCGAGGGCAC CCTGGCCTTC
GGCAAGGCCG AAGAGCTGCC GCCCACCCTG TCGCGCTTCA ACCTCGCCCC TCTGATCGAC
GACGTGCTCG ACAGCGAGGC ATTGGCCTGC GACCCGAGCG AGATCGTGCT GCGCGCCGAA
ATCCCGCCGG GGCTGATGAT CCGGGCCGAC AGCGAGCAGC TCTACCGCGT GATCACCAAC
CTCGTGCGCA ATGCCCGCCA GGCGATCGAG GCGACCGGCC AGCCCGGTGA GATCTGCGTC
CTGGCGCGCG AAGAGGATGC CGAATGGGTG GTCTGCATCC GCGACAGTGG CCCCGGCCTG
CCCCCCAAGG CCCGCGAGAA TCTGTTTACC GCCTTCCAGG GCGGGGTGCG CAAGGGCGGT
ACGGGCCTGG GCCTCGTGAT CGCGGCCGAG CTGGTGCGCG GCCATGGCGG TGCGCTCGAC
CTGGTGCGCT CGGACGAGAG CGGTACGGAG TTCGCCCTGC GGCTGCCACG CAACTCCGCC
ATCCTCGACG CCGCGGCGGA ATGA
|
|---|
| Protein sequence | MNSLSGRFLV LTIIFVMLAE VLIFVPSVAR FREDYLLDRL ERAQIASLAL LATPDDMVAP
ELEAELLANA EVFNVVLRRD EVRQLILSRP MPPEIYGTYD LRDPSAYELI RDALWNIVMT
EDQVIRVIGN PVRGAGEVIE ITMPTGPLRA ALIDYGIRIL ILSAVISIFT AALLFLAVRR
FLVKPMRRVV DHMTAYAEAP EDARRIIIPD AGVRELRDAE AALQSLQTQL TTALKQKDRL
AQLGSAVAKI SHDLRNVLTV AQLLADRMER SEDPTVQKAA PKLVRSISRA VNLCEGTLAF
GKAEELPPTL SRFNLAPLID DVLDSEALAC DPSEIVLRAE IPPGLMIRAD SEQLYRVITN
LVRNARQAIE ATGQPGEICV LAREEDAEWV VCIRDSGPGL PPKARENLFT AFQGGVRKGG
TGLGLVIAAE LVRGHGGALD LVRSDESGTE FALRLPRNSA ILDAAAE
|
|---|
| |