Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0315 |
Symbol | rluC |
ID | 5711565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 303518 |
End bp | 304564 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641266211 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_001531665 |
Protein GI | 159042871 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.458148 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGTG TGCAGACCCT GACCGTGGGC GTGGACGAGG GGGATCAGCG GCTCGACCGC TGGCTGCGGC GGCGGTTTCC CCATCTGGGC CAGGGCCGGA TCGAGAAGAT GTGCCGCAAG GGCGAGCTGC GCGTGGATGG CGGGCGGGTG AAGCCCGCGA CGCGCCTGCA GACCGGGCAG GCCGTGCGGG TGCCGCCCCT GCCGGCGCCG GGCGAGATCA CGGCGCGGCC CGCGCGGGCG CGGATCTCGG ACGCGGATCG CGAGATGCTG CAGGGCACGG TGATCTACCG CGACGCGGAT ATCCTGGCGC TGAACAAGCC CGCCGGGCTG CCGGTGCAGG GCGGCTCTGG GCAGGAGCGC CACATCGACG GGATGGCCGA GGCGCTGCAA TTCGAGCTCG ACGAGCCGCC GCGCCTGGTG CACCGGCTCG ACAAGGACAC GTCGGGCGTG CTGCTGATGG CGCGGACCCG GCGCAGCGCC GCGGCCCTGA CGGCGGCATT CCGGGCGCGC CAGACGCGCA AGATCTATTG GGCGGCGGTG GCCGGCGTGC CCCAGCCACA GCTGGGCACC GTGCGCTATG CCCTGATGAA GGCGCCGGGG CACGGCAAGC GCGGCGAGGG GGAGAAGATG CTCTGCATCG ACCCCCGGCA GATGGACGCC CACCCGGACG CCAAGCGCGC GACGACGGAT TACGCCGTGC TCTCGGCCCT GGGGCGGCGG GTGGCCTGGT GCGTGCTGGT GCCGATCACC GGGCGGACGC ACCAGTTGCG CGCGCATATG GCCGAGCTGG GGCATCCGAT CATCGGCGAC GGCAAGTATG GCGGGTCGGG GCAGGAAAAC CTCGGCGATG GCTGGGGCGC GCAGCTGGGC GGCGAGATGT CGAAGAAGCT GCATCTACAT GCGCGACATC TGAGCCTGAC GCACCCTGTC ACCGGCGCGC AGCTGTCGCT GACCGCGCCG CTGCCGCCCC ATATGGCGCG CACCTGGGAG GCGCTGGGCT GGGATGCGCG GGACGTGCCC GTGGACCCGT TCGAGGCGCT TGAATGA
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Protein sequence | MSGVQTLTVG VDEGDQRLDR WLRRRFPHLG QGRIEKMCRK GELRVDGGRV KPATRLQTGQ AVRVPPLPAP GEITARPARA RISDADREML QGTVIYRDAD ILALNKPAGL PVQGGSGQER HIDGMAEALQ FELDEPPRLV HRLDKDTSGV LLMARTRRSA AALTAAFRAR QTRKIYWAAV AGVPQPQLGT VRYALMKAPG HGKRGEGEKM LCIDPRQMDA HPDAKRATTD YAVLSALGRR VAWCVLVPIT GRTHQLRAHM AELGHPIIGD GKYGGSGQEN LGDGWGAQLG GEMSKKLHLH ARHLSLTHPV TGAQLSLTAP LPPHMARTWE ALGWDARDVP VDPFEALE
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