| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0268 |
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| Symbol | rpoB |
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| ID | 5712194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 264787 |
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| End bp | 268923 |
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| Gene Length | 4137 bp |
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| Protein Length | 1378 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266164 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001531618 |
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| Protein GI | 159042824 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAA CCGTTCTCGG CCAAAAACGG TTCCGCAAGT ATTACGGCAA GATCCGCGAA
GTCCTGGAGA TGCCGAACCT GATCGAGGTG CAGAAGAGCT CCTATGATCT TTTCCTGAAA
TCCGGCGACC AGCCCCAGCC CATGGACGGC GAGGGGATCA TGGGCGTGTT TCAGTCGGTC
TTCCCGATCA AGGACTTCAA CGAAACGGCG GTCCTGGAGT TCGTGAAATA CGAGCTCGAG
AAGCCGAAAT ACGATGTCGA GGAATGCCAG CAGCGCGACA TGACCTATTC CGCGCCGCTG
AAGGTGACCC TGCGCCTGAT CGTGTTCGAT GTGGACGAGG ATACCGGCGC GAAATCCGTC
AAGGACATCA AGGAGCAGGA CGTCTTCATG GGCGACATGC CCCTGATGAC CCCGAACGGG
ACGTTCATCG TGAACGGGAC CGAGCGTGTG ATCGTGAGCC AGATGCACCG CTCCCCGGGC
GTGTTCTTCG ACCATGACAA GGGCAAGACC CATTCCTCGG GCAAGCTGCT CTTTGCCTGC
CGCATCATTC CCTATCGCGG CTCCTGGCTG GACTTCGAGT TCGACGCCAA GGACCTGGTC
TTCGCGCGCA TCGACCGCCG CCGGAAGCTG CCGGTGACCA CGCTGCTCTA TTCCCTCGGG
ATGGATCAGC AGGACATCAT GGATGCCTAT TACGACACCG TGACCTACAC CCACCGCAAG
GGCGAGGGCT GGGTCACCAA GTTCTTCCCC GAGCGTATTC GCGGCACCCG TCCCACCCAG
GACGTGGTCG ACGCGGCCAC CGGCGAAGTG ATCGCCGAAG CCGGCAAGAA GGTGACGCCG
CGCGCGGTCA AGCAGTTGAT CGACGAAGGC AATGTCTCGG AAATCCTGGT GCCCTTCGAC
GGCATCATCG GCAAGTTCGC CGCCAAGGAC ATCATCAACG AGGAAAACGG CGCGATCTAT
GTCGAGGCCG GCGATGAGCT GACCTGGGAA GTGGACAAGG ATGGCGCGGT GACCGGCGGC
ACGCTCAAGG AGCTGCTGGA CGCGGGGATC GAAGAGATCC CGGTGCTGGA CATCGACAAC
ATCACCGTGG GCGCCTACAT GCGCAACACC TTGGCCGCGG ACAAGAACAT GAACCGCGAC
ACCGCGCTCA TGGACATCTA CCGCGTCATG CGCCCGGGCG AGCCGCCCAC CGTCGAGGCC
GCCTCGGCCC TGTTCGACAC GCTGTTCTTC GACAGCGAGC GCTATGACCT GTCGGCCGTG
GGCCGGGTCA AGATGAACAT GCGCCTGGCG CTCGATGCCG AGGACACCGT GCGCACCTTG
CGCAAGGAAG ACATCGTCTC CTGCATCAAG GCGCTGGTCG ATCTGCGCGA CGGCCGCGGC
GATATCGACG ACATCGACCA TCTCGGCAAC CGCCGGGTCC GGTCCGTCGG CGAGTTGATG
GAGAACCAGT ATCGCGTCGG CCTGCTGCGG ATGGAGCGCG CGATCAAGGA GCGCATGTCC
TCGGTCGAGA TCGACACGGT CATGCCCCAG GACCTGATCA ACGCCAAGCC GGCAGCGGCC
GCGGTGCGGG AATTCTTCGG CTCTTCGCAG CTGTCGCAGT TCATGGACCA GACCAACCCG
CTGTCCGAGG TCACGCACAA GCGGCGCCTC TCGGCGCTCG GGCCGGGCGG TCTGACCCGC
GAGCGCGCGG GCTTCGAGGT GCGCGACGTG CACCCGACCC ATTACGGTCG GATGTGCCCG
ATCGAGACGC CGGAAGGCCC GAATATCGGC CTGATCAACA GCCTCGCGAC CTTCGCGCGG
GTGAACAAGT ACGGCTTCAT CGAGACCCCC TATCGCCGGG TCGAGGACGG CAAGGTCACC
GACGAGGTGA ACTACATGTC CGCGACCGAA GAGATGCGGC ACACGGTGGC CCAGGCGAAC
GCCAATCTCG ACGAGAGTGG CAGCTTCGTG AACGAGATGG TCAACACCCG CCAGTCGGGC
GAATATACGC TGGCCCCGCG CGAGAGCGTG GACCTGATCG ACGTGTCGCC CAAGCAGTTG
GTGTCCGTGG CGGCCTCGCT CATTCCGTTC CTGGAAAATG ACGACGCGAA CCGCGCGCTC
ATGGGCTCCA ACATGCAGCG CCAGGCGGTG CCGCTGTTGC AGGCCGATGC GCCCTTCGTC
GGCACCGGGA TCGAGGGCGT GGTGGCCCGC GACTCCGGGG CGGCGATCAT GGCCCGCCGG
GGCGGGTTCA TCGACCAGGT GGACGCCACC CGGATCGTGA TCCGCGCCAC CGAGGATCTC
GAGCCGGGCG ATCCCGGCGT GGACATCTAC CGTCTGCGCA AGTTCCAGCG CTCGAACCAG
AACACCTGCA TCAACCAGCG TCCGCTGGTG AAGGTGGGCG ACAAGGTCGG CAAGGATGAC
GTGATTGCGG ACGGTCCTTC GACGGACCTG GGCGAGCTGG CCCTCGGCAA GAACGTGGTC
GTCGCCTTCA TGCCGTGGAA CGGCTACAAC TACGAGGACT CGATCCTGAT CTCCGAGCGC
GTGGCGCGCG ACGACGTCTT CACCTCGATC CATATCGAGG AATTCGAGGT CGCCGCCCGC
GATACCAAGC TCGGGCCCGA GGAAATCACC CGCGACATCC CGAATGTCGG CGAGGAAGCT
CTGCGAAACC TCGACGAGGC GGGCATCGTC TATATCGGCG CCGATGTGGG CCCCGGCGAT
ATCCTCGTGG GCAAGATCAC CCCCAAGGGC GAAAGCCCGA TGACGCCGGA GGAGAAACTC
CTGCGCGCGA TCTTCGGCGA GAAGGCCTCG GATGTGCGTG ACACCTCCAT GCGCCTGCCG
CCGGGGGATT TCGGCACGGT CGTGGAAGTC CGCGTCTTCA ACCGTCACGG CGTCGAGAAG
GACGAACGTG CCTTGCAGAT CGAGCGTGAG GAGGTCGAAA GCCTCGCACG CGACCGCGAC
GACGAGATGG CCATCCTGGA GCGCAACATC TACGCGCGCC TGAAGGACAT GATCCTCGGC
AAGACCGCGG TGAAGGGGCC CAAAGGCGTC AAACCCGGCT CCGAGATCAC CGAGGACCTG
CTGGGCACGC TCAGCCGTGG CCAGTGGTGG CAGCTCGCCC TCGAAGACGA GGCCGAGGCG
CAGATGGTCG AGGCCCTGAA CCAGCAATAC GAGGCGCAGA AGCGCGCCCT GACCGCGCGG
TTCGAGGACA AGGTCGAAAA GGTCCGCCGC GGCGACGACC TGCCCCCGGG TGTGATGAAG
ATGGTCAAGG TGTTCATCGC GGTGAAGCGC AAGCTGCAGC CGGGTGACAA GATGGCCGGG
CGTCACGGCA ACAAGGGCGT GATCTCGAAA GTGGTGCCGA TGGAGGACAT GCCGTTCCTC
GCCGATGGCA CCCCGGTCGA TTTCGTGCTC AACCCGCTGG GTGTGCCGTC GCGGATGAAC
GTGGGCCAGA TCCTGGAGAC CCATATGGGC TGGGCCGCGC GCGGCATGGG GCTGAAGATC
GACGAGGCGT TGGGCGAATA CCGGCGCTCC GGCGACATGA CGCCCGTGCG CGAGGCGATG
CGCCTGGCCT ATGGCGACGA AGCCTATGAA GAGGCGATTT CCGGGCTCGA CCAGGACGAC
CTGCTGGAGC GGGCGGGCAA TGTCACCCGC GGGGTGCCGA TCGCCACACC GGTCTTCGAC
GGCGCCAAAG AGGCGGATGT CAACGACGCG CTGACCCGCG CGGGCTTTGA CACCTCCGGT
CAGTCCGATC TCTACGATGG GCGGACGGGC GAGAAATTCG CGCGTCAGGT CACGGTCGGG
GTCAAGTACC TGCTCAAGCT GCACCACCTG GTGGACGACA AGATCCACGC GCGCTCCACG
GGGCCCTACA GCCTCGTCAC CCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGTGGCCAG
CGCTTCGGGG AGATGGAGGT CTGGGCGCTC GAAGCCTATG GTGCTGCCTA TACCCTGCAG
GAGATGCTGA CCGTCAAGTC GGACGACGTG GCGGGTCGGA CCAAGGTCTA TGAGAGCATC
GTCAAGGGCG AGGACAACTT CGAGGCCGGC GTGCCGGAGA GCTTCAACGT GCTCGTGAAG
GAAGTCCGCG GCCTCGGCCT AAACATGGAA CTCCTGGATG CGGAGGGCGA GGAATAA
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| Protein sequence | MAQTVLGQKR FRKYYGKIRE VLEMPNLIEV QKSSYDLFLK SGDQPQPMDG EGIMGVFQSV
FPIKDFNETA VLEFVKYELE KPKYDVEECQ QRDMTYSAPL KVTLRLIVFD VDEDTGAKSV
KDIKEQDVFM GDMPLMTPNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAC
RIIPYRGSWL DFEFDAKDLV FARIDRRRKL PVTTLLYSLG MDQQDIMDAY YDTVTYTHRK
GEGWVTKFFP ERIRGTRPTQ DVVDAATGEV IAEAGKKVTP RAVKQLIDEG NVSEILVPFD
GIIGKFAAKD IINEENGAIY VEAGDELTWE VDKDGAVTGG TLKELLDAGI EEIPVLDIDN
ITVGAYMRNT LAADKNMNRD TALMDIYRVM RPGEPPTVEA ASALFDTLFF DSERYDLSAV
GRVKMNMRLA LDAEDTVRTL RKEDIVSCIK ALVDLRDGRG DIDDIDHLGN RRVRSVGELM
ENQYRVGLLR MERAIKERMS SVEIDTVMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQTNP
LSEVTHKRRL SALGPGGLTR ERAGFEVRDV HPTHYGRMCP IETPEGPNIG LINSLATFAR
VNKYGFIETP YRRVEDGKVT DEVNYMSATE EMRHTVAQAN ANLDESGSFV NEMVNTRQSG
EYTLAPRESV DLIDVSPKQL VSVAASLIPF LENDDANRAL MGSNMQRQAV PLLQADAPFV
GTGIEGVVAR DSGAAIMARR GGFIDQVDAT RIVIRATEDL EPGDPGVDIY RLRKFQRSNQ
NTCINQRPLV KVGDKVGKDD VIADGPSTDL GELALGKNVV VAFMPWNGYN YEDSILISER
VARDDVFTSI HIEEFEVAAR DTKLGPEEIT RDIPNVGEEA LRNLDEAGIV YIGADVGPGD
ILVGKITPKG ESPMTPEEKL LRAIFGEKAS DVRDTSMRLP PGDFGTVVEV RVFNRHGVEK
DERALQIERE EVESLARDRD DEMAILERNI YARLKDMILG KTAVKGPKGV KPGSEITEDL
LGTLSRGQWW QLALEDEAEA QMVEALNQQY EAQKRALTAR FEDKVEKVRR GDDLPPGVMK
MVKVFIAVKR KLQPGDKMAG RHGNKGVISK VVPMEDMPFL ADGTPVDFVL NPLGVPSRMN
VGQILETHMG WAARGMGLKI DEALGEYRRS GDMTPVREAM RLAYGDEAYE EAISGLDQDD
LLERAGNVTR GVPIATPVFD GAKEADVNDA LTRAGFDTSG QSDLYDGRTG EKFARQVTVG
VKYLLKLHHL VDDKIHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ
EMLTVKSDDV AGRTKVYESI VKGEDNFEAG VPESFNVLVK EVRGLGLNME LLDAEGEE
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