| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0055 |
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| Symbol | holA |
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| ID | 5711677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 51747 |
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| End bp | 52772 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641265949 |
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| Product | DNA polymerase III, delta subunit |
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| Protein accession | YP_001531405 |
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| Protein GI | 159042611 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1466] DNA polymerase III, delta subunit |
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| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000000000100325 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACTCG CCCCCCGCGA CCTGCCCGGA TTTGTCGCCC GGCCCGAACC GGGACGGGCG
GGCATCCTGC TCTACGGCGC GGATGCCATG CGGGTCTCCC TGCGCCGCCA GGCCCTGCTC
AAGGCGCTGG TGGGCGAGAA GGGCGACGAG GAAATGCGCC TGACCCGGCT GCACGGCCCC
GACCTGCGCC GGGATCCCGC CGCCCTGATG GACGCCATGA AGGCGATCAG CATGTATCCC
GGCCCCCGCG CCGTCCATGT GGATGCCGCG ACCGATCAGG CGGCCCCCGC CATCACCGCC
GCCCTGGGCG ACTGGCGCGA GGGCGACGCG GTGCTCGTGG TCACCGCCGG CAGCCTCGGC
GCGAAATCCG CCCTGCGCAA GGCGTTCGAG GGGCATCGCA ACGCCTATGC CGCGGGCATC
TATGACGACC CCCCCGACCG GGCCGAAATC GAAGCCCTCC TGCGCAGCGC CGGCATCGCC
GAGGTCGGGC GCGACGCCAT GTCGGACCTG ACGGACCTGT CGCGCGCGGT CGATCCCGGC
GACTTCGCGC AGATCGTCGA GAAGCTCGCC CTCTACAAAC ACGGCGATGC CAGCCCGATC
ACCCCCGAGG ATCTCGCCGC CGTCGCCCCC GCCACCACCG AGGCCGAAAT CGACGCGCTC
CTGCATGCCG TGGCCGAGGC CGAGGTCGCG CGCATCCCCC CCCTCGTTGC GCGGCTTTCG
GGCCAGGGCG AGGGCGCGGT CCGGCTCTGC ATCGGCGCGG TCATGCACTT CCGCCGCCTC
TACACCGCCG CCATCGACCC CGGCGGCCCC GCCGCGGGCA TCTCCCGCGC CCGCCCGCCG
GTCTTCGGCC CGGCCCGCAA CCGCATGATC CGCCAGGCCC AGTCCTGGGG CGCGCCGAAA
CTGGAAACCG CGCTCTCGAT CCTGACCGAA ACCGACCTCG CCCTGCGGTC CTCGCAAAAG
GCCCCGCAAA TGGCGCTGAT GGAACGCGCG CTCATCCGCC TCGCCATGCT GAACGCCCAA
CGCTGA
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| Protein sequence | MKLAPRDLPG FVARPEPGRA GILLYGADAM RVSLRRQALL KALVGEKGDE EMRLTRLHGP
DLRRDPAALM DAMKAISMYP GPRAVHVDAA TDQAAPAITA ALGDWREGDA VLVVTAGSLG
AKSALRKAFE GHRNAYAAGI YDDPPDRAEI EALLRSAGIA EVGRDAMSDL TDLSRAVDPG
DFAQIVEKLA LYKHGDASPI TPEDLAAVAP ATTEAEIDAL LHAVAEAEVA RIPPLVARLS
GQGEGAVRLC IGAVMHFRRL YTAAIDPGGP AAGISRARPP VFGPARNRMI RQAQSWGAPK
LETALSILTE TDLALRSSQK APQMALMERA LIRLAMLNAQ R
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