Gene Dole_0043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0043 
Symbol 
ID5692857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp51701 
End bp54091 
Gene Length2391 bp 
Protein Length796 aa 
Translation table11 
GC content55% 
IMG OID641262619 
ProductLVIVD repeat-containing protein 
Protein accessionYP_001527930 
Protein GI158520060 
COG category[S] Function unknown 
COG ID[COG5276] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.00601e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGC GTCTGTCCCG ATGGATGATC ACTATTTTCT GCTGCCTCTG GGCAACCGGT 
GTCCATGCCC TTGTGGGCGA TATTCAGCTG CTCAACCGCT GGCCCATGGC CGGCCCCAAT
TCGATTGCCA TTGCCGATAT CGACGGCACC GACTATGTCT TTGTCGGGGA CGGAGAGGTG
GTTTCCGTGT ATGACACCAC TCCGGCCCTG CTTTCCCGGT TTGACGTCGC CCTTTCCGGA
GCGGCGGACC TGGATAAACC CGGCGAGGTG GCAGGCACCG AAGGTATTTA CGGAATTTTT
TACGCGGAGA ACCACCTGTA TGTAGCCTGC GGCAACGAGG GGTTGCAAAT CTTTGACGTG
ACGGACCCGC TGAATGTTGG AACACCCACG GGTGTGTATA TTCCCCGGGA AACTCTGGGC
CGGGCAAAGG TTTCGGATGT GACGGTACTG GACGGATACG CCTACCTGAC CTATTTTCTG
CTGACCTCCG AAGGGTACGA CAGTGGCATT CAGGTGATTG ATGTAACAAA TCCCGCGAAT
CCTGTGCTGA AAGGTGAAAG CGAGCTGCCC GACACCTTTG CCGATCTGAA ACGGGCTCAA
GGCCTTCATG TAACAGACAT TGACGGAACC CTTTATGCGT TTGTGGCTGA CCTTTATAAC
GGTCTGGCGA TTTTTGATGT AAACGTGCCT GCCGATCCAC ACGCAGAGGC CTCTTGCTAT
TTTACCTATG CCTATGACGT GACCGTTGCC GAAATTCCGG CCGACAGCGG CAATTATTAT
GCGTATGTGG CCGATGATTT TGCCGGATTG CGTATCATCT CCTTTGATCC GGACGAGTTT
ACCAATGAAG TGGACATCCT GTACGGTGCG GAAGGAAATG TCATTCCCAC CTGCCAGTAT
GCCGGCGGCT CTTCCAAGGC CCTGTCCGTG ACGGTTGATC CGGCAAATGA GCTGGTATTT
GTCGGAGACC AGTATTATGG ACTGCTGGCG ATTGATGTGT CGGACGTTGC TAAGATCAAC
ACCCTTCCGG GAGATGTGGA CCTGACAGGC TATGTAACCA ACTATGCCAC GGATATGACC
AGTGCCTACA GCGTGTGCGC GGAGACCGGT GGTCCCACGG TTGTTTATGT GGCAGACGCC
ATCAAGGGAT TTCAGCGGGC TTCTCTGGTG GATCCCATGG ACGAAACAAC CTGGGAGATA
ACAGGCGTGG AAAACACCAA TACCCCCGCA GATGCCGACG CCCTGTTTAT TGACGAGAAC
ACCAATTATA TTTATGTCGT GGACGATGAT GCCACCAATG CGGGACACGA TGAGGGGCTT
AGAATATTTT ATGCTATTGT TTCAGAAGAA TATTTAACCT TTTTGCTTAA AGGAAAGCTG
CCCACCGATG GTGAGGCAAA GGATGTCTAT GTACACGACG GGTACGTTTA TGTGGCCGAC
GGCTCCAAGG GGCTGAAGAT CATTGATCCG GGGCTGCCGG AAGATGGAGA CGACGCGGAT
GAGGATGGCG ACAACCAGTT TGTGGCCCAG CCGGAACTTA CGGGAAGCTG CGTGGTGGCC
GGCGGTACCG GGGATGCCAT GGATGTTGTG GTGTCCGGCA CTTTTGCCTA TGTGGCGGCC
GGGGCCGGCG GGCTGAGTAT CATCAACGTG GTCAACAAAA CCGCGCCTCA AGAAAAAGGG
GTACTGGGCG GCGCCCATAT TTCAGACGCC CGGGCCGTAT GGGTCAAGGA TGTGGATGGC
AATGGTACCG ATGACTATGC CTATGTGGCC GACGGGGGTA ACGGTTTAAA AATAGTCGAC
ATTTCCGACA AAACCAACCC CGCGCTTGTC AAAACCGTTG CGCTTGAGGG AACGGCCCAG
AGCGTTTTTG AACTCAGAGG CCGGGCGTAT GTGGCGGGCG GGGATGCGGG GTTTCACGTA
GTTTTTGTGT CAGATCTGGA AAACGCCCGG CTGGTCAGCG GGTATAACGC CGCCCCCTTT
GAGGATGTAA AAGATGTGTT TGCCGCCATT TCCAATGAAA GCCCGGCCGT GGACCTGCTC
TGGGTGGCCA CCGGAAAAAC CGGTATGGGC TTTTTTACCT ATCCGCCCGA CGTGCCCCCT
CAACTGGTGG TTCATTTCGA TACCTTTGGT GACGCAAAGG CAGTCTCTGT GTTTGGTGAC
TTTGCTTTCC TTGCCGACGG TGCGGGCGGG CTTCTGGCCA CAACCGTGTC CACGGCCAGC
GGAGGAGCCA CAGATGAAGG GTGGGACTGG CTGGCCGGGA TCGTTCCCGT CGATATTCAT
TCAACCACCT ATGGGGGATC TTCGGGATGT GCTGTGGACA CAGTGCGGCC CGCCGCCACA
GGGCTGTGGC AGTCTTTAAA AAAGCTTTTT CATAAAGGGT CGGCCTTTTG A
 
Protein sequence
MKQRLSRWMI TIFCCLWATG VHALVGDIQL LNRWPMAGPN SIAIADIDGT DYVFVGDGEV 
VSVYDTTPAL LSRFDVALSG AADLDKPGEV AGTEGIYGIF YAENHLYVAC GNEGLQIFDV
TDPLNVGTPT GVYIPRETLG RAKVSDVTVL DGYAYLTYFL LTSEGYDSGI QVIDVTNPAN
PVLKGESELP DTFADLKRAQ GLHVTDIDGT LYAFVADLYN GLAIFDVNVP ADPHAEASCY
FTYAYDVTVA EIPADSGNYY AYVADDFAGL RIISFDPDEF TNEVDILYGA EGNVIPTCQY
AGGSSKALSV TVDPANELVF VGDQYYGLLA IDVSDVAKIN TLPGDVDLTG YVTNYATDMT
SAYSVCAETG GPTVVYVADA IKGFQRASLV DPMDETTWEI TGVENTNTPA DADALFIDEN
TNYIYVVDDD ATNAGHDEGL RIFYAIVSEE YLTFLLKGKL PTDGEAKDVY VHDGYVYVAD
GSKGLKIIDP GLPEDGDDAD EDGDNQFVAQ PELTGSCVVA GGTGDAMDVV VSGTFAYVAA
GAGGLSIINV VNKTAPQEKG VLGGAHISDA RAVWVKDVDG NGTDDYAYVA DGGNGLKIVD
ISDKTNPALV KTVALEGTAQ SVFELRGRAY VAGGDAGFHV VFVSDLENAR LVSGYNAAPF
EDVKDVFAAI SNESPAVDLL WVATGKTGMG FFTYPPDVPP QLVVHFDTFG DAKAVSVFGD
FAFLADGAGG LLATTVSTAS GGATDEGWDW LAGIVPVDIH STTYGGSSGC AVDTVRPAAT
GLWQSLKKLF HKGSAF