Gene Franean1_6588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6588 
Symbol 
ID5674903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp8017878 
End bp8018567 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content72% 
IMG OID641245439 
Producttwo component transcriptional regulator 
Protein accessionYP_001510831 
Protein GI158318323 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.13217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCGTC CCGTCCGGGT CCTCGTCGTT GACGACGAGG AGGCGATCAC CGATCTCGTC 
GCCATGGCGC TGCGCTACGA GGGCTTCGAC GTGAGCGCCG CGCACTCGGG GCAGGCGGCG
CTCACGCAGG TCTCGCGGGA GCCGCCCGAC CTGCTCGTGC TGGACGTCAT GCTGCCCGAC
ATCGACGGCT TCGCCGTCTG CCAGCGGCTG CGCAACGCCG GGCGGGACGT GCCGACGCTG
TTCCTGACCG CTCGCGACAC CACCGAGGAC AAGGTGCACG GGCTGACGCT CGGCGGCGAC
GACTACGTCA CGAAGCCGTT CGTGGTCAGT GAACTGGTCG CCCGGGTCCG GGCGATCCTG
CGCCGGGCCG GAATGGCCGA CGGCGCGCCG GAGCCGCTGC GCTTCGCCGA TCTCGAGCTG
GACCCGGAGA CCCGCGAGGT GCGCCGGGCC GGGCGCCTCG TCGAGCTGAC CGTCACCGAG
TACCGGCTGC TGCACTACCT GCTGGTCAAC GCCCGCAAGG TGCTGACCCG GGCCCAACTC
CTCGACCACG TCTGGGGGCA CGACTTCGGC GGTGACGCCC GGGTCCTGGA GACCTACGTC
AGCTATCTGC GCCGCAAGAT CGACGACGCC CCGCCGGCGC TGATCCACAC GGTGCGCGGG
GTTGGCTACG TGCTGCGCCT GCCGCGGTGA
 
Protein sequence
MERPVRVLVV DDEEAITDLV AMALRYEGFD VSAAHSGQAA LTQVSREPPD LLVLDVMLPD 
IDGFAVCQRL RNAGRDVPTL FLTARDTTED KVHGLTLGGD DYVTKPFVVS ELVARVRAIL
RRAGMADGAP EPLRFADLEL DPETREVRRA GRLVELTVTE YRLLHYLLVN ARKVLTRAQL
LDHVWGHDFG GDARVLETYV SYLRRKIDDA PPALIHTVRG VGYVLRLPR