| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6225 |
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| Symbol | |
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| ID | 5674544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 7560592 |
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| End bp | 7562733 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641245077 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001510473 |
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| Protein GI | 158317965 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGGAT CTAGCCGGCA CGGCCGCGAG AACTCGGCCG CCGCTCTGGA TCCACCCGAC
GGAACTGACC CGGGCGCTCC GCCCGGGTCC GAGACCGGGC TGTTCACCTC GCAGCTGTTC
GAGCTGGCCC CGATCGGCCT GCTGATCACT GACCGGAAGC TGCGGGTACG CCAGATGAAC
CGCGCGATGC GAGCCATCAA TGGGTTGTCC GCCAGCGACA TCGGGCAACG ACCGTTGAGC
GAGTTGCTCC CCGACGTCCA CCCCGGGGCC TGGGAGGTGA TCCGTCAGGT CCTTGCCACC
GGCGAGCCCA TCCTCAACGT GGAGATCACC GGTTCCACTC CTGCCCCCTG GCCAGGGCAG
CGGACTTGGC GGGTGTCCCA CTATCCGCTC CGCGGCGGGG ACGGGTCCGT CGCAGCGGTG
GGCGTCGCCC TGGTGGACGT GACCGACCAG CGGCGGGCGG AGGCCGCGCG GGACAAGGTG
GAACAGCGGT TGCGGCTGCT GGGCCGGGCC AGTGGGTTGA TCGGAGCGTC ACTGGACCTG
ACGGCGACGC TGGAGGGGAT GGTCGAGCTC ATCGTTCCCG AGTTCGCCGA CAACTGCGAC
CTGTACCTCA CCGAGGAGCC GCTGGACGCG ACCGCCCCGC CGGCCCGGCT GCCGCTGCGT
CTCACCGTCG CCGGGAACAC GCCGTTGCTG CCGCCGCCGG AGGCCCACCA GCTCCTGCCT
TCCGCCATCA CCTATGTCGA CCAGGACAAC CCAGCGCACC GTTCGCTCGC CACCCGCCGT
CCGGTCCTCT TCGACGTCGA CGAGCGGGTG ATCGCCAGCG TCGATCATCC CCAGCGGGAT
GAGCACTTCG AATACATCGC CGTTCGCACC GCGATCACTG TCCCGCTGCT GGTCGGCAAC
GAATACCACG GTTCGGTGTA CCTCGGTCTC GGGCAGTCCG GGCGGACCTA CATCGAGTAC
GACGTGCAGA CCGCGGCGGA GCTCGGCAGC CGGATCGCCA ATGCGGTCGC CAACGCTCGC
GCCTTCGACC GCCAGCGCAC GGCCGCAATC ACCCTGCAAC GCGGGCTGCT GCCCGGCGGG
TTGCCGGCTG TCGAGGGTCT GGACATCGAA TGGCGCTACG AGCCCGGCAC GGCAGGAACC
GAGGTCGGCG GCGACTGGTT CGACATCGTG CCGCTGTCGG CCGGCCGGGT CGCCCTCGTC
ATCGGCGACG TGATGGGCCG CGGTCTGGCC GCCGCCGCCG TGATGGGCCA GGTCCGCGCC
GCGGTCCGTG CCTTCGCCGC CCTCGACCTC CCGGCAGCGG ACGTCCTGAC GCACCTCGAC
AGCCTGGTGC AGAATATCGG TGCCGGGCCG GACGGTGCCC TCGTCAGCTG CGTCTACGCA
ATCTTCGAGC CGGCAACCGC CAGCATCACC GTCGCCAACG CGGGTCACCT CCCGCCCGCC
CTCGTCGATG CGTACACAGA CGCTCGACTG CTGGAGGAGC CGGAAGGAAT CATCCTCGGC
ATTGGCGGCC CACCGTGCAC CGAAGTTCGG TACCCGTTCC CGGCAGGCAG CACCCTCGCC
CTCTACACCG ACGGACTCAT CGAATCCCCG AAGATTGACA TCGGCCAGGG TGTCCGCCAG
CTGCAGGCGG CCCTCGTCGC CACCGGCAGC TTGCCCGCCA CGGCCGAGCG GCTGCTCACC
CTCATCGACC GCAGCGGCGG TTACGACGAC GACGTCGCCC TCCTCCTCGT CCGCGCCACC
GCACGCGCCA CCACCTGGAC AACCACCGTG GAGCCCGATC CGCGGGCCGC CAAAGCCGCC
CGCGACACCA CCGTCACCGC GTTGCGGCAG TGGGAGCTCA CCGACAGCGT CGACCTTGTG
GAGCTCCTCG TCAGCGAGCT CGTCACGAAC GCCATCCGGT ACGCGAAGAC CCCCAGCGAC
CTGACGCTAC GCCGCGGTCG CCACGCCCTC TACGTCGAAA TCGCCGATGG CGACAGCCGG
GTGCCGCGCC TGCTGAACCC TTCCGCCGAT GACGAGGGCG GTCGCGGGCT TCAGCTTGTC
GCCCAACTCG CCACCCAGTG GGGAGCTCGT CCCACCCGCA CCGGGAAGAC AGTCTGGTTC
GAACTCGACC TGACCGGCGC GGATATGAAA CGGTCAGAAT AA
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| Protein sequence | MGGSSRHGRE NSAAALDPPD GTDPGAPPGS ETGLFTSQLF ELAPIGLLIT DRKLRVRQMN
RAMRAINGLS ASDIGQRPLS ELLPDVHPGA WEVIRQVLAT GEPILNVEIT GSTPAPWPGQ
RTWRVSHYPL RGGDGSVAAV GVALVDVTDQ RRAEAARDKV EQRLRLLGRA SGLIGASLDL
TATLEGMVEL IVPEFADNCD LYLTEEPLDA TAPPARLPLR LTVAGNTPLL PPPEAHQLLP
SAITYVDQDN PAHRSLATRR PVLFDVDERV IASVDHPQRD EHFEYIAVRT AITVPLLVGN
EYHGSVYLGL GQSGRTYIEY DVQTAAELGS RIANAVANAR AFDRQRTAAI TLQRGLLPGG
LPAVEGLDIE WRYEPGTAGT EVGGDWFDIV PLSAGRVALV IGDVMGRGLA AAAVMGQVRA
AVRAFAALDL PAADVLTHLD SLVQNIGAGP DGALVSCVYA IFEPATASIT VANAGHLPPA
LVDAYTDARL LEEPEGIILG IGGPPCTEVR YPFPAGSTLA LYTDGLIESP KIDIGQGVRQ
LQAALVATGS LPATAERLLT LIDRSGGYDD DVALLLVRAT ARATTWTTTV EPDPRAAKAA
RDTTVTALRQ WELTDSVDLV ELLVSELVTN AIRYAKTPSD LTLRRGRHAL YVEIADGDSR
VPRLLNPSAD DEGGRGLQLV AQLATQWGAR PTRTGKTVWF ELDLTGADMK RSE
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