Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3660 |
Symbol | |
ID | 5672026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4336580 |
End bp | 4338256 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641242543 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001507963 |
Protein GI | 158315455 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGATC AAGCGCACGA AGCGGGGGCG GAGCCCGTCG AAGCCCTCGC GCCGGTCGAC GCCGCCGAGC CCGACGCCGC CGAGCCCGCT GCCACCGAGC CCGCTGCCAC CGAGATCGCT GCCACCGAGA TCAATGCCAC TGAGGTCGAT CCGGCGTTGC GCCGCCTCGC GCTCACGGTC ACCCTCGGCG CGATCATGGC CATCCTCGAC ACGACGATCG TGGCCGTAGC CATCAACACC CTCGGGCGGG ACTTCGACGC CTCGCTGTCG ACGATCTCCT GGGTGTCCAC CGGCTACCTG CTGGCACTCG CCGTCGTCAT CCCGCTGACC GGCTGGTCGG TCGAGCGGTT CGGCGCGACC CGGATGTGGA ACATCTCGCT GGTGCTGTTC CTGGCCGGCA GCGCGCTGTG CGGCGCCGCC TGGTCGGCCG GCAGTCTGAT CGTCTTCCGG GTGCTCCAGG GCCTCGGCGG CGGAATGATC ATGCCGATCT GCATGACCCT GCTGGCCAGC GCCGCCGGCC CGCAGCGAAT CGGCCGCGTC ATGAACATCG TCGGTGTGCC TGCGCTGGTC GCCCCGATCC TGGGCCCGGT CATCGGCGGT CTGCTCGTCG ACAACCTCGA CTGGCGCTGG ATCTTCTTCG TCAACCTGCC GATCGGCGCG GTAGCACTGG TCGCGTCATG GCGGGTGCTG CCGCGCGACG ACCGCGGGCA GTCGCACCAC CGGCTCGACG TCCCCGGTCT GCTGCTGATC TCGCCCGGCC TCGCGGCGCT CGTCTACGGC CTGTCCGAAG CCGGTTCGGG GGACGGCTTC GGAGCACTGA GGGTCCAGAT CAGCACCGCC GCCGGAGTGG TCGCGCTGGT GGCCTTCGTC GTGCACGCCC TGCGTCGCGA GGGCGCGCTG CTCGATCTCC GTCTGTTCGG CGACCGCACC TTCACCGTCG CCGGGGTCAC CACGTTCATG GTCGGCGCCG GCCTGTTCGG CGGGATGTTC CTGCTGCCGC TGTACTTCCA GGTCGCCCGC GGGCAGAGCG CGCTTGCCGC CGGCCTGTCG CTCGTCCCGC AGGGGGTGGG CGCGATGATA GGCATGCCGA TCGCCGGGCG GATCGCCGAC CGCCGCGGAG CCGGCTACGT CGTACCGGTC GGGATGGCCG TCTGCCTGCT CGGCACGGTC GCCTTCACGC AGGTCGACGC GCACACCAAC ACGGTCGCGC TCGGGGCGCT GCTGTTCGTG CGCGGCCTGG GCTTCGGCGC CTCGATGATG CCGGCGATGA GCGCCGCCTA CGTGACGCTC CGGCCCGCCG CTGTGCCGCG GGCCACCACG ACGCTCAACA TCCTGCAGCG GGTCGGTGGC TCCATAGCCA CCGCCCTGCT CGCGGTGGAG CTACAGCACG GGATCACCAG CCGGCTCCCC GGCTCGGGCG GCGGCATGCT GAACGCATCC GAAGGAACGG ACCTGCCCGC GACGGTCGCG GACAAGATCG CTCATGCCTT CGGCGCCACG TTCTGGTGGG TCGTCGGCCT GACCGTGCTC GGTCTCGTGT CCAGCATTTT CCTGCCCCGC CATGCCCCGA AGCCCACCGC CGCCCCCGAC GGGCATGCCG GGGATGGGGA GGACGAGCCG GCCGCGGAGG GAGAGCACGT CCCGGTCGGC ACTCCGGCAC CTGATCCAGC CGTGTGA
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Protein sequence | MSDQAHEAGA EPVEALAPVD AAEPDAAEPA ATEPAATEIA ATEINATEVD PALRRLALTV TLGAIMAILD TTIVAVAINT LGRDFDASLS TISWVSTGYL LALAVVIPLT GWSVERFGAT RMWNISLVLF LAGSALCGAA WSAGSLIVFR VLQGLGGGMI MPICMTLLAS AAGPQRIGRV MNIVGVPALV APILGPVIGG LLVDNLDWRW IFFVNLPIGA VALVASWRVL PRDDRGQSHH RLDVPGLLLI SPGLAALVYG LSEAGSGDGF GALRVQISTA AGVVALVAFV VHALRREGAL LDLRLFGDRT FTVAGVTTFM VGAGLFGGMF LLPLYFQVAR GQSALAAGLS LVPQGVGAMI GMPIAGRIAD RRGAGYVVPV GMAVCLLGTV AFTQVDAHTN TVALGALLFV RGLGFGASMM PAMSAAYVTL RPAAVPRATT TLNILQRVGG SIATALLAVE LQHGITSRLP GSGGGMLNAS EGTDLPATVA DKIAHAFGAT FWWVVGLTVL GLVSSIFLPR HAPKPTAAPD GHAGDGEDEP AAEGEHVPVG TPAPDPAV
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