| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0175 |
|---|
| Symbol | groEL |
|---|
| ID | 5668600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 211645 |
|---|
| End bp | 213267 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641239104 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001504548 |
|---|
| Protein GI | 158312040 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0553371 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGA TCATTGCCTT CGACGAGGAG GCACGGCGCG GCCTGGAGCG CGGCATGAAC
CAGCTGGCCG ACGCGGTCAA GGTCACGCTC GGCCCCAAGG GTCGCAACGT CGTGCTGGAG
AAGAAGTGGG GCGTCCCCAC GATCACCAAC GACGGCGTCA GCATCGCCAA GGAGATCGAG
CTCGAGGACC CGTACGAGAA GATCGGCGCG GAGCTCGTCA AGGAAGTCGC GAAGAAGACC
AACGACGTCG CGGGTGACGG CACCACCACC GCGACCATTC TCGCCCAGGC TCTGGTGCGC
GAGGGCCTGC GCAACGTCGC CGCCGGCGCG AACCCGATGG GCCTGAAGAA GGGCATCGAG
GCCGCCGTCG AGCGTGTCTC CGAGGAGCTC TCCAGCGTCG CCAAGGACGT GGAGACCAAG
GAGCAGATCG CCTCCACCGC CTCCATCTCC GCCGGTGACC CGGCCATCGG CAGCATGATC
GCCGAGGCGA TGGACAAGGT CGGCAAGGAA GGCGTCATCA CCGTCGAGGA GAGCAACACC
TTCGGGCTCG AGCTCGAGCT CACCGAGGGC ATGCGCTTCG ACAAGGGCTA CATCTCGCCC
TACTTCGTCA CCGACACCGA CCGCATGGAA GCTGTCCTCG ACGACCCGTA CATCCTGATC
GCGAACAGCA AGATCTCCGC GGTCAAGGAC CTCCTCCCGA TCCTGGAGAA GGTCATGCAG
GCCGGCAAGC CGCTGGCCAT CATCTCCGAG GACGTCGAGG GCGAGGCCCT GGCCACCCTG
GTCGTCAACA AGATCCGCGG CACGTTCAAG AGCACCGCGG TCAAGGCGCC GGGCTTCGGT
GACCGCCGCA AGGCCATGCT GACCGACATC GCCGTCCTCA CCGGCGGCCA GGTCATCTCC
GAGGACGTCG GCCTCAAGCT CGAGGGCACC ACCGTCGACC TGCTCGGCCG GGCCCGCAAG
GTCGTCATCA CCAAGGACGA GACCACCATC GTCGAGGGTG CCGGCGACGC GGACCAGATC
GCGGGGCGGG TCAACCAGAT CCGCAACGAG ATCGAGAAGT CCGACTCCGA CTACGACCGC
GAGAAGCTCC AGGAGCGGCT GGCCAAGCTC GCCGGCGGCG TCGCGGTCAT CAAGGTCGGC
GCGGCCACCG AGGTCGAGCT CAAGGAGAAG AAGCACCGCA TCGAGGACGC CGTCTCGAAC
GCGAAGGCCG CGGTCGAGGA GGGCATCGTC GCCGGCGGTG GCGTCGCGCT CCTGCAGGCC
GCGACCAGCG CCTTCGAGAA GCTCGACCTC TCCGGCGACG AGGCCACCGG TGCGAACATC
GTCCGTCTCG CCCTGGAGGC GCCGATCAAG CAGATCGCGT TCAACAGCGG TCTCGAGGGC
GGCGTCGTGG TCGAGAAGGT GCGCAACCTC CCGACCGGGC ACGGCCTGAA CGCGGCGACC
GGCGAGTACG TCGACATGGT CGCCACCGGG ATCATCGACC CGGCGAAGGT CACCCGCTCG
GCGCTGCAGA ACGCCGCGTC GATCGCCGGC CTCTTCCTCA CCACCGAGGC CGTCATCGCG
GACAAGCCGG AGAAGGACAA GGCCCCGGCC ATGCCGGGTG GCGGCGGCGA GATGGACTTC
TGA
|
|---|
| Protein sequence | MPKIIAFDEE ARRGLERGMN QLADAVKVTL GPKGRNVVLE KKWGVPTITN DGVSIAKEIE
LEDPYEKIGA ELVKEVAKKT NDVAGDGTTT ATILAQALVR EGLRNVAAGA NPMGLKKGIE
AAVERVSEEL SSVAKDVETK EQIASTASIS AGDPAIGSMI AEAMDKVGKE GVITVEESNT
FGLELELTEG MRFDKGYISP YFVTDTDRME AVLDDPYILI ANSKISAVKD LLPILEKVMQ
AGKPLAIISE DVEGEALATL VVNKIRGTFK STAVKAPGFG DRRKAMLTDI AVLTGGQVIS
EDVGLKLEGT TVDLLGRARK VVITKDETTI VEGAGDADQI AGRVNQIRNE IEKSDSDYDR
EKLQERLAKL AGGVAVIKVG AATEVELKEK KHRIEDAVSN AKAAVEEGIV AGGGVALLQA
ATSAFEKLDL SGDEATGANI VRLALEAPIK QIAFNSGLEG GVVVEKVRNL PTGHGLNAAT
GEYVDMVATG IIDPAKVTRS ALQNAASIAG LFLTTEAVIA DKPEKDKAPA MPGGGGEMDF
|
|---|
| |