| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0143 |
|---|
| Symbol | |
|---|
| ID | 5668568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 172402 |
|---|
| End bp | 173202 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641239072 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001504516 |
|---|
| Protein GI | 158312008 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.170765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0134311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGGTC CCGTCAGCTG GGCTCCGGGA AACGGCCGGA TGGGCCGGCC GCGTGCCGAG
CCGGTGTTCT CGCGCCGGGC CGGTGCGGAG ACCGCGCCCG CCCGGCACCT GAGCTCGATC
CCGGTGCCGC CCGGGCCGGC GCGGGCGAGG CCGGTCTCCC GGCCGCCCGG CTCGCCGCGG
CCGCTGCGCT GCGACGCCGA GCGCAACCGT GAGCGGGTGC TCGTCGCCGC CCGTGAGCTG
TTCGTCGAGC AGGGCCTCGA CGTCGGCGTC GACGAGATCG TGAAGCGGGC CGGGGTCGGG
ATGGGCACGC TGTACCGGCG GTTCCCGAAC AAGGACGCGC TCATCGAGGC GATCCTCGGC
ACGGTCGTCG ATCATCTGCG CTCGATCGCC GAGGACGTGC TGGCCACCGA GCCACCGACG
GTGGCGCTGC GGTCGTTCTT CGTCCGGTCG ATCACGACCG AGGTCTGCCA GTGGGCCTTC
CTGTCGAGCC GGCTTTGGCG CGGGCGGACC AACGAGCTGC TGTTCGCCGA TGTGGTCCCG
CTGATCGGAG AGATGTTCAC CCAGGCGCAG CAGGCCGGGG CGGTGCGGCC GGACGTCGTG
CTCTCCGACC TGATCGTGCT GGTCCGGTCG ATGCGGGTCG TGCTGGACCT GACCGACGGT
TTCGCACCCG AGGTCTGGCG GCGCCACCTC GACCTCCTGC TTGACGGCCT GCGGCCCTGC
TCCGGCAACG CCGTCCTCGA CGTCGGGCCG ATGCCGTTCG ACGCGCTCGC GATCTCGGCG
GCGGCCAGGC CGCTCGTCTG A
|
|---|
| Protein sequence | MPGPVSWAPG NGRMGRPRAE PVFSRRAGAE TAPARHLSSI PVPPGPARAR PVSRPPGSPR
PLRCDAERNR ERVLVAAREL FVEQGLDVGV DEIVKRAGVG MGTLYRRFPN KDALIEAILG
TVVDHLRSIA EDVLATEPPT VALRSFFVRS ITTEVCQWAF LSSRLWRGRT NELLFADVVP
LIGEMFTQAQ QAGAVRPDVV LSDLIVLVRS MRVVLDLTDG FAPEVWRRHL DLLLDGLRPC
SGNAVLDVGP MPFDALAISA AARPLV
|
|---|
| |