| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3000 |
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| Symbol | |
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| ID | 5663390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3676168 |
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| End bp | 3677544 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641237639 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001502852 |
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| Protein GI | 157962818 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.649705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATGA GCCAACCTAT GCCACCGGCG GGAACTAATC GAGTCGCAAC CGACTCGCCA
ATGATCACCG AGCCAATCGG AAAACTGTTT TGGCGCTATT CACTCCCTAC GATCCTCTCA
ATGTTAGTGA CGGGAATATA CGTCACCATC GACGGCATGT TTATTGGGCA CTACCTCGGG
GAAGTCGGCT TAGCGGGCAT GATTTTGGCT TACCCTATCG CTGCTGTGCT CTACGCGATT
GGCGCAACGC TGGGAATGGG CGGCGCTGCT TTAGTGTCGA TTCATCTGGG GCAAGGTGAA
ACTAGCATTG CTCGGCGCAT ATTGGGCAAT ACTTTTAGTC TGTGCCTTAT CTCGGGCCTT
ATCACCACAG TACTCGGTTG CTACTTTTCT AGAGATATCT TGATGATGCT CGGCGCTGAA
GGTGAGATCC TAAATAGCGC CGACGACTAT CTTTTTTGGT ATTTTGCCCT AGGCACTTTC
CCCATAGTGT CGATGGCATT TACTGCATTG CTGCGTAATG ATGGTCGGCC CGGATTCGTG
ACTTTCGTTT TGATCTTAGG TGGCGTGCTA AATACAGTGC TCGATTGGTT GTTAATCGTG
GTGTTCCCTT ATGGGTTAAT GGGCGCAGCG ATAGCCACCA TGATTTCCCA AGCGGTGACG
GGGGCCCTGT GTTTACAGCA TTTCTTCAGT AGTAAAACCG AGATAGGCAT CAACCTTGAG
CAGATGAAGC TCAAATGGGA TCACTGCGCC AATATCATTC GTGTAGGTAC CCCAAGTTTC
TTGATGAACA TGTACTTGAC CGTGGTGCTG ACGCTACACA ATGTGGCATT TCTTACGGTA
GGCACGCCGC TGCATGTTGC TGCCTATGGG GTCGTGAGTT ATACCGAAGC CTTCTTTTAC
CTCTTATTTG AAGGTATCGC TTTTGGCGTA CAGCCTATTT TGAGTTTTAA TGCTGGTGCC
AAACGCTTCG ATAGGGTTAA ACAGGCACTT AAAATGGCCT TCTCTGTGAC CTTAGTGTGC
GCCGCCTTAG GTCTCGTCTT TATCTATTCT GTGCCGCAAC TTTTTGTCTA TATCTTTGCC
GGTGACAACG ACTTACTCAC GCCGATAGCC ATCGAGGGAA TGCGTTGGTA TTTCTGGGGC
TTACCTATGG AAGGCTTGTT ATTAGTGGGT GCATCATTTT TCCAAGCAAT TAATTACTCA
AAAGAAGCAT CGATTTTAAC CGGGGCCAAG CTGATCCTGT TTAGCGCTAT CTTGTGTGTG
TTTGCCTGGG CATTTGGTGT GACAGGGGTG TGGATCTCAC TGGCTACTTG TAGCACGGTA
TTAGCCATCT GGATGGGCTG GATAATGAAG CGTACTCATA GCAAGCTGTT AGCCTAA
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| Protein sequence | MTMSQPMPPA GTNRVATDSP MITEPIGKLF WRYSLPTILS MLVTGIYVTI DGMFIGHYLG
EVGLAGMILA YPIAAVLYAI GATLGMGGAA LVSIHLGQGE TSIARRILGN TFSLCLISGL
ITTVLGCYFS RDILMMLGAE GEILNSADDY LFWYFALGTF PIVSMAFTAL LRNDGRPGFV
TFVLILGGVL NTVLDWLLIV VFPYGLMGAA IATMISQAVT GALCLQHFFS SKTEIGINLE
QMKLKWDHCA NIIRVGTPSF LMNMYLTVVL TLHNVAFLTV GTPLHVAAYG VVSYTEAFFY
LLFEGIAFGV QPILSFNAGA KRFDRVKQAL KMAFSVTLVC AALGLVFIYS VPQLFVYIFA
GDNDLLTPIA IEGMRWYFWG LPMEGLLLVG ASFFQAINYS KEASILTGAK LILFSAILCV
FAWAFGVTGV WISLATCSTV LAIWMGWIMK RTHSKLLA
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