| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1230 |
|---|
| Symbol | |
|---|
| ID | 5661629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1495878 |
|---|
| End bp | 1496930 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641235792 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001501092 |
|---|
| Protein GI | 157961058 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.593917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACGG CTAACATAGA CACTGCTAAC TTGAACTCAA CTAGCTATAC TACGATTGCG
GCCTGGTCTT TAGCCGTTGC TAGAGCATTA AGCGTTAGCC AAATAGAGCC AAAGTCGCTA
TTTCATCGAG TTGGTTTAGA TCTTGACGCA CTGGAAGCGC AGCCTAGTGG TCGAGTCGAC
ATAGATAAAA TGACTCGACT CTGGCAAGCG GCTGAGCAGG CGTCAGCATC GGATGCCTTT
GGTCTAACCG TTGGTCAATA TGCCTTTCCC ATGCATTTTC ACGCTTTAGG CCAGTTAATG
ATGAGTAGCG ACTCATTAGC GCAGGCCTTT GAAGCACTGC CTGAATACTC TGCACTGGTG
AGTAATAGTG GCCAGATCCG CTTACAGCGC ACACCTCAGT GGCTTGGATT TACCATTAGC
CCGTTAAACG GGGTTGAGAT CAGCGAGCTC GCTATCGATG CATTTTTTAG TAGCTTGATG
CAGCAGGGTA AGCAGATGGT CGGCCATCGC CAGTTTGTGC GTAGGGTGGA GTTAATGCGT
GGTGCGCCGA AATCAATTCA GCCTTGGCAA GACTGCTTCG GTTGCCCTGT TGTGATGAAG
GCGGCAGATA ATTGCATGTG GATGGACAGG AGCATGCTAG AGCAATCGGC GCTGACTAAA
GATCCCTTAT TGGCCGAGTC TAATGAACTG GCCGTGCGGC AATATCTCGA TAATATGCGG
GCATTGAGTT GGCGACAGAA AACCAGCCAA GGGATCCATG CAAGTTTACT TAATAAAGAG
CCTACAGCGG CGAAAATCGC CCAGATGTAC AATATTAGTG AGCGCAGTTT AGGCCGTTAC
CTACAGCTTG AAGGAACGGG GTTTAGAGAG TTACTTAAAC TTAAGCGCCA AGAGTTAGCA
CATCACTATC TAGTTAACAC CGATATGCCG ATCAACACGT TATCCGATAT CTTAGGCTAT
AGCAGCGTAA GTAACTTTAC TCGATCATTC AAATCTTGGC AGGGGAGCAG CCCTTCGCAA
TATCGTCAAA AAAGCCGCAC GTTTACTGGC TAA
|
|---|
| Protein sequence | MSTANIDTAN LNSTSYTTIA AWSLAVARAL SVSQIEPKSL FHRVGLDLDA LEAQPSGRVD
IDKMTRLWQA AEQASASDAF GLTVGQYAFP MHFHALGQLM MSSDSLAQAF EALPEYSALV
SNSGQIRLQR TPQWLGFTIS PLNGVEISEL AIDAFFSSLM QQGKQMVGHR QFVRRVELMR
GAPKSIQPWQ DCFGCPVVMK AADNCMWMDR SMLEQSALTK DPLLAESNEL AVRQYLDNMR
ALSWRQKTSQ GIHASLLNKE PTAAKIAQMY NISERSLGRY LQLEGTGFRE LLKLKRQELA
HHYLVNTDMP INTLSDILGY SSVSNFTRSF KSWQGSSPSQ YRQKSRTFTG
|
|---|
| |