| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1233 |
|---|
| Symbol | |
|---|
| ID | 5603729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 1357062 |
|---|
| End bp | 1358207 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640936760 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001477465 |
|---|
| Protein GI | 157369476 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00899] sugar efflux transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0103633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.340559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGA TACGGCTGAC CTTTATGGTC GTTGCTTTTT TTTCCGGCAT TGCCGGGGCG
CTGCAAATAC CGACCCTGAG CCTGTTCCTC ACCACCGAGG TGCGGGTGAC GTCATTATGG
GTCGGTTTTT TTTATGCAGT AAACGCCGGG GTCGGCATTA TTGTCAGTTT TTTGCTGGCG
AAAAAATCAG ATCGCCAGCG CGACCGGCGC CATTTGATTT TAATCTGTTA TTTATTGGCG
GCGGGAAACT GTCTGTTATT TGCTTTTAAT CGTAATTACC TGACGTTAAT TACCGCGGGC
GTGCTGCTAA CCGCCATTGC CAATACGGCG ATACCGCAAT TATTTGCCCT GGCGCGTGAA
TACGGGGAGC GGTCATCGCA AAACGTCGCT ATGTTCAGCG CTATCATGCG CGCCCAACTT
TCGCTGGCCT GGGTATTTGG CCCGCCATTG GCTTTTATGC TGGTGGTGAA TTATGGCTTC
ACGGCCATGT TTATGTTTGC TGCCGGCATA TTCCTGCTGG TCACGCTGCT GGCCTGGTGG
ATATTACCCG AGGTCACCCG CCCGCCGGTG GGTAATGAAA TCGCCATACC GCAAAAAACG
GTCTTCGATA AAGACGTTAG CCGGTTGTTT TTCGCCTCGG TATTGATGTG GACCTGCAGC
GCCATGTATC TGATTGATGT GCCGTTGTAT ATCACTGCCG AGTTGGGTTT GCCGCAAAGT
CTGACCGGCT GGATGATGGG CGTCGCCGCC GCGATCGAAA TCCCGATCAT GATCCTGGTA
GGGCGCTACG TAAACCGGGT GGGCAAGCGC CTGATGATGG CGGGGGCGAT GGTGGCCGGC
ATACTGTTTT ATGCCGGGAT GCTGTGGTTT ACCTCGGCCG CCGGGTTGCT GGTCTGGCAG
CTGTTCAACG CGATATTTAT CGGCATTATT GCCACCGTCG GCATGCTGTA TTTCCAGGAT
TTAATGCCGG AACGGGCGGG CATGGCCACC ACTTTATTCA CCAACAGTAT TTCTACCGGT
GTGATCCTGG CCGGAATATT ACAAGGGATC CTGACCGAAT ACGGGCCGCA TTCCTCCGTT
TATCTGTTAG CCATATTACT GCTTTGTATT GCTTTACCTG TCGGTTTTAA AACCCGGGAA
GTTTAG
|
|---|
| Protein sequence | MNSIRLTFMV VAFFSGIAGA LQIPTLSLFL TTEVRVTSLW VGFFYAVNAG VGIIVSFLLA
KKSDRQRDRR HLILICYLLA AGNCLLFAFN RNYLTLITAG VLLTAIANTA IPQLFALARE
YGERSSQNVA MFSAIMRAQL SLAWVFGPPL AFMLVVNYGF TAMFMFAAGI FLLVTLLAWW
ILPEVTRPPV GNEIAIPQKT VFDKDVSRLF FASVLMWTCS AMYLIDVPLY ITAELGLPQS
LTGWMMGVAA AIEIPIMILV GRYVNRVGKR LMMAGAMVAG ILFYAGMLWF TSAAGLLVWQ
LFNAIFIGII ATVGMLYFQD LMPERAGMAT TLFTNSISTG VILAGILQGI LTEYGPHSSV
YLLAILLLCI ALPVGFKTRE V
|
|---|
| |