| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4350 |
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| Symbol | |
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| ID | 5613187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5326513 |
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| End bp | 5327712 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935320 |
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| Product | general secretion pathway protein L |
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| Protein accession | YP_001476080 |
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| Protein GI | 157377480 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3297] Type II secretory pathway, component PulL |
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| TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.697858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATGTGA GTGAGAGACT ATTTATCCGC TTAGGAACAA CCTCAGAGCA GCCCTGCTCT
TGGCTGGTTT GGTCTGAGCA GGAACAAGAG ATCATCGCCT CTGGTGAGGT AAAGGATGCA
GCTGCTCTGT CGAGTCTGAC TGAGCGCGCC GGTAATCGCC CTGTGGATGT ATTAGTTCCC
TCCTCTTCGA TCACCCTGAC TAAGGTCGAT CTCCCGGAAA AAGGACAACG CCAGGCAATA
CAGGCTCTCC CCTTTATGCT CGAAGAGAGC TTGGCAGAGA ATGTTGAACA ACTTCATTTT
GTGCCGGGTC CACGCAGTGG CGAGTCTTTG AGTGTCGCCG TGGTTGCCCA TGAACAGATG
CAAAACTGGC TTAATTGGCT CAGTGAAGCA GGTTTAAAGG CCAAACGCAT CGTTCCCGAC
TGCTTAGCTC TACCGCTGGA GCAGTGTCAG TGGGCAGCAA TGAAATTCAA CCGTGAGTAT
CTGTTGAGAA CCGGTGAAGG TGCGGGTGTC AGCCTGAGTG AAGAGTGGAT GAACAGTGTG
CTACCTAAAC TACTGCCGGT TGAGTCTGAA ACGCCTGTGA CGGTTGCTGC CTATAGTGAG
TTATCAATGA CTGGCGCAGA TATACAGGAA CAGGCGCTTG AGTTACCTAT GTTAGTGCTA
GCTAAGGGAG TCTTAACCGC ACCTCTGAAT CTGTTATCCG GTGCTTATAC GCCTAAGCGA
GACTATGGTA AAAATCTCAT GTTATGGCGT AATGTCGCGA TCGTCGCCGT GGCTGCTCTC
CTGTTGGCTT TAGTCAATAA AGGGCTCAAC ATCTATCAAC TCGATGCTGA GCAGGCTCGT
TTGCAGGCTG AAAGTGAGGC TATTTATAAG CGAGTGGTTC CGGGAAGCTC ACGCATCGTA
AACCTGAGGT CTCAGATGGA TAGAGAGCTA CGCAGCATGC AAGGCCAGGG CGGCGGGAGT
GAATTTTTCT CTATGCTTGA AGGATTAGAA GAGGCCTTTA CCCAGGTTGC AGATTTGAAG
CCGACAACCT TACGCTTCGA TAGCGCACGT AACGAGCTCA GAATGCAGGT TACTGCTAAG
AGTTATGCAC AGATTGAACA GTTTAAGACG ATTGTGTCGC GCTCCTATCA GCTCGATTCG
GGGGCTATGA ACAGTGGCGA AGACGCCGTA ACCAGTACGC TAACGCTGAG GAGTAAGTAA
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| Protein sequence | MNVSERLFIR LGTTSEQPCS WLVWSEQEQE IIASGEVKDA AALSSLTERA GNRPVDVLVP
SSSITLTKVD LPEKGQRQAI QALPFMLEES LAENVEQLHF VPGPRSGESL SVAVVAHEQM
QNWLNWLSEA GLKAKRIVPD CLALPLEQCQ WAAMKFNREY LLRTGEGAGV SLSEEWMNSV
LPKLLPVESE TPVTVAAYSE LSMTGADIQE QALELPMLVL AKGVLTAPLN LLSGAYTPKR
DYGKNLMLWR NVAIVAVAAL LLALVNKGLN IYQLDAEQAR LQAESEAIYK RVVPGSSRIV
NLRSQMDREL RSMQGQGGGS EFFSMLEGLE EAFTQVADLK PTTLRFDSAR NELRMQVTAK
SYAQIEQFKT IVSRSYQLDS GAMNSGEDAV TSTLTLRSK
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