Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4142 |
Symbol | |
ID | 5612946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5087802 |
End bp | 5089220 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640935097 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001475874 |
Protein GI | 157377274 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00647616 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCA GTAAAATTCG GCAACTAAAA CGCAGCGGCT TAGCGTTAGC CGTTAGCGCA CTGATTATTC CCGCGTCGGC TTACTGCCAG ACATTGGAGC AAGCGGTCGC GCACACCTTG GATACGAATC CTGAAATTCG TATCGCATTT AATCGCTTTA AAGCTCGTGA AGAGCAGGTT AGTCAAGCGA TAGCCGGTTA CATGCCAACG GTAGATATCA GTGGAGGATA TGGATATGAG CAGACAGATA GCCCATCGAC ACGCAGAAAG CCAAATGTAG GTGAAGTCGA TTCTGATGGT GTTGTTGAGT TGGAACGTGG TGAGGCAGGT TTCAGCATCA AGCAGATGCT GTTCGATGGT TTCTATACCA GTAGCGAAGT CGACAGATAT AGCTTCGAAG CCAGTGCCGA ACAGTGGGCA CTCTTCTCCG CTGCCGAAGA TATGGCTCTC GATGTGGCTA AAGTTTATGT TAACTATATC CGTAGCGAGC AGGTACTGAC GCTGGCAGAA AAAAACCTGG CCAGCCATCA GGAGATATAC GACCAGATTA AACAGAGAAC CGATTCGGGT TTAGGCTCTG TTGCCGATCT GTCACAAATA ACGGGTCGTC AGGCTCGTGC CAATTCAAAC CTTATCTCGG CTAAAAATAA CTTTTTCGAT GCGAAAGCAC AATTTATCCG CGTGGTAGAA CAGCAACCTG AAAGCTTAAT TGTTCCTGTC CCCGATGACG ATATGTTGCC TGAAGATCTC AGCACCAGCG TCAAAGTCGC ACAAGAAAAT CATCCGATTT TAAAATCGGC TGCCAGCGAT ATTGAAGCGG CTAAAAACGA GAAATCTTCG GCTCAATCCA ACTACTATCC AAAATTCACT TTGGATCTGG AAGGGAACTG GAATAATAAC TTAGATGGTG AAGAGGGGAT CTCAGGTTCA GGCCTATTCT TAAATGATGT CGGCGGATAC AGCAATGATC TGGTTGCCAT GGTCAGAGTC AAATATAACC TTTTTGCAGG CGGTAAAGAT CTCGCTCGCA CGAAAGAAGC CGCATATAAA ATCGGTGAAG CCAAAGAGAT CCGTCAACGC GCTCATCGTC AAGTCGTTGA GGGTGTTAAC CTAGCCTGGA ACGCCTACGA ACTACTCGAA CCGCAAAAAA TGTATATTCG TGAGCACGTC ATCGCGGCTA AAGATACACA AGTCGCTTAC AGCCAACAGT TCAACCTGGG ACAACGAACC CTACTCGATC TATTGGATAC CGAAAACGAA CTTTTCGAAG CCCGTAAAGA TTACCTTGAA GCCGAGTACG ATAGTATTCT GTCTGAATAC CGCATTTTGA ATGCTACAGG TCGATTATTG GAATCATTAA GAGTCACTCG CCCGGATGTA TGGCAAGGTG AGCGTAACTA CGAAGGAGGA GTTAACTAA
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Protein sequence | MNTSKIRQLK RSGLALAVSA LIIPASAYCQ TLEQAVAHTL DTNPEIRIAF NRFKAREEQV SQAIAGYMPT VDISGGYGYE QTDSPSTRRK PNVGEVDSDG VVELERGEAG FSIKQMLFDG FYTSSEVDRY SFEASAEQWA LFSAAEDMAL DVAKVYVNYI RSEQVLTLAE KNLASHQEIY DQIKQRTDSG LGSVADLSQI TGRQARANSN LISAKNNFFD AKAQFIRVVE QQPESLIVPV PDDDMLPEDL STSVKVAQEN HPILKSAASD IEAAKNEKSS AQSNYYPKFT LDLEGNWNNN LDGEEGISGS GLFLNDVGGY SNDLVAMVRV KYNLFAGGKD LARTKEAAYK IGEAKEIRQR AHRQVVEGVN LAWNAYELLE PQKMYIREHV IAAKDTQVAY SQQFNLGQRT LLDLLDTENE LFEARKDYLE AEYDSILSEY RILNATGRLL ESLRVTRPDV WQGERNYEGG VN
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