| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3378 |
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| Symbol | |
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| ID | 5609956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4114973 |
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| End bp | 4115746 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934316 |
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| Product | deoxyribose-phosphate aldolase |
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| Protein accession | YP_001475110 |
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| Protein GI | 157376510 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
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| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000747392 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00551238 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGATT TAAAAAAAGC AGCACAAAAA GCCATTGAAT TGATGGATCT GACCACCTTG
AACGATGATG ATACCGATCA GAAGGTGATT GAACTTTGTC ATAAGGCTAA GACGCCTGCC
GGCAACACTG CAGCAATCTG TATCTATCCT CGCTTCATTC CAATCGCACG CAAGACACTG
AACGAGATGG GCTGCGAAAG CATCCGCATC GCGACAGTGA CTAACTTCCC TCACGGTAAC
GATGATATCG CTATCGCGGT ACTAGAGACT CGTGCTGCCG TTGCTTACGG CGCAGACGAA
GTCGATGTGG TTTTCCCATA CCGTGCACTG ATGGCTGGTA ACGAGACTGT TGGTTTCGAG
CTGGTTAAAG CCTGTAAAGA AGCGTGTGGC GAAGGTGTAC TGCTTAAGGT GATCATCGAG
TCTGGCGTAC TGCAAGACCC TGCACTTATT CGTAAGGCTT CTGAGTTATG TATCGATGCA
GGTGCTGACT TCATTAAGAC TTCTACCGGT AAAGTTCCGG TTAATGCAAC CATCGAAGCT
GCTGAAATCA TGATGACAGT GATCAGCGAA AAGAACACCA AAGTCGGCTT CAAGCCTGCT
GGCGGCGTTC GTGATGCAGC TGCTGCCGGT GAGTTCTTAG GACTTGCTGC GCGTCTTTTA
GGTGATGAGT GGGCGACGCC ACGCACCTTC CGTTTTGGCG CGTCTAGCTT GCTAATAAAC
CTTCTGCATA CCTTGGAACT AGGTGAAGCC GCTAAGGGTC CTCAAGGTTA CTAA
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| Protein sequence | MSDLKKAAQK AIELMDLTTL NDDDTDQKVI ELCHKAKTPA GNTAAICIYP RFIPIARKTL
NEMGCESIRI ATVTNFPHGN DDIAIAVLET RAAVAYGADE VDVVFPYRAL MAGNETVGFE
LVKACKEACG EGVLLKVIIE SGVLQDPALI RKASELCIDA GADFIKTSTG KVPVNATIEA
AEIMMTVISE KNTKVGFKPA GGVRDAAAAG EFLGLAARLL GDEWATPRTF RFGASSLLIN
LLHTLELGEA AKGPQGY
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