| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3226 |
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| Symbol | caiC |
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| ID | 5613801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3915951 |
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| End bp | 3917504 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934164 |
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| Product | putative crotonobetaine/carnitine-CoA ligase |
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| Protein accession | YP_001474958 |
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| Protein GI | 157376358 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCG TTGGTAGCAA AACAATAAGA TGCATGTGGG AAGAGCGTGC GCGTAAATAT
AGTGATAACA CAGCGTTAGT TTTTGAGGAT GCTGCTGGCG ATGTCCGAGA GTTAACTTAT
AGTGCACTGA ACAATGAAAT TAACAAGGCC GCAAATCTAT TCCTTCAATT AGGTATTAAT
AAGGGGGATA AAGTAGCCGT ACAGTTATAT AACAGCCCTC AATTTATATT CTGTTGGTTT
GGATTAGCAA AAATTGGCGC CGTTATCGTT CCTATTAATA CACAATATGT CTATGGGGAA
TGTAAATACA TCATCAATAA ATGTGATGTA AAAGCGGTGG TTATTGAAGA GGAGTTTCTG
CCTACCTTTA AAAGAATAGA GCAGGATGAC GATAATTCAG TAAATAATAT CTTAGTGACA
AGGGTGGTAA GTTCAGATAT TTCGAATGCC ATTAATTTTG ATCTGCTTTT GAGCCAGCAG
TCTACTCAGT TAGAGAAGAT GGTGCCCTTA AGCAGTGACG ATGTAGTCGA AATTTTATGT
ACTTCAGGCA CGACCTCCAG GCCCAAGGGC GTGGAGATCA CTCATTGTAA TCTACTGTTT
GCGGGCTATT ACACGGCTTG GCAAACCAAC TTGAGAGCCG ATGACACCTA TTTGACTATG
ATGCCCAGCT TTCATATCGA TTTTCAGTGT AATGCGGCTA TGGCAGCGTT TACCGTTGGT
GCGCGTCTGG TCATGCTTGA GAAGTACAGT GCGCGTAAGT TCTGGAAGCA GGTTTGTGAT
TACAGGGCCA CTATCACCCA CAGCATGCCG ATGATAGTAC GGACCCTGAT GTTGCAGCCC
GTAATGCCCA ATGAACGCGA GCATTGTCTG CGTGATATGT TGTTTTTTAT GCATATTTCA
GATCAGGAAA AATTGGATTT CGAGACGCGA TTCAAGGTTG AGCTGTTTAA TTCCTATGGT
ATGACAGAGA CCTTAGTCGG GCTGATTGGC GACACGCCAG GTGAAGAACG TCACTGGCCG
TCCATCGGCA GGCCCGGACT ATCTTATGAG GCCAAAATTA CGGACGAAAA TGGCAATGAA
GTTGCGCCTA ATATCGTCGG CGATTTGCGG GTCAAAGGTG TTCCCGGGAG AACCATACTC
AAGGGTTACT ATAAAGATCC CGAAGCGACG GCAGAGGTTC TGACTGCCGA CGGTTGGCTC
TACACCGGTG ATAAAGGTTA TGTCGATGAG AGAGGGTTAT TTTATTTTGT CGATAGAAAG
ACAAATATGA TTAAACGCTC CGGAGAGAAT ATTTCAAGCA GTGAAATTGA AAAAGCTCTT
ATGTCGCATC CCGATATTTT GGATGCAGCA GTTATCGGCG TACCCGATCA TATTCGTGAT
GAAGCGGTTA AAGCCTTCGT TATTTTTAAC GAGGGAGTGT CCTTGAGTAT CGATGAAATT
CTAAATTATT GTTCTGAAAA TATGGCGAAG TTTAAAGTTC CATCTTTCGT TGAAATAAGA
GAGTCATTCC CAAGAACCTG TACTTGTAAA ATAGACAAAA AACTTCTTGC GTGA
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| Protein sequence | MDIVGSKTIR CMWEERARKY SDNTALVFED AAGDVRELTY SALNNEINKA ANLFLQLGIN
KGDKVAVQLY NSPQFIFCWF GLAKIGAVIV PINTQYVYGE CKYIINKCDV KAVVIEEEFL
PTFKRIEQDD DNSVNNILVT RVVSSDISNA INFDLLLSQQ STQLEKMVPL SSDDVVEILC
TSGTTSRPKG VEITHCNLLF AGYYTAWQTN LRADDTYLTM MPSFHIDFQC NAAMAAFTVG
ARLVMLEKYS ARKFWKQVCD YRATITHSMP MIVRTLMLQP VMPNEREHCL RDMLFFMHIS
DQEKLDFETR FKVELFNSYG MTETLVGLIG DTPGEERHWP SIGRPGLSYE AKITDENGNE
VAPNIVGDLR VKGVPGRTIL KGYYKDPEAT AEVLTADGWL YTGDKGYVDE RGLFYFVDRK
TNMIKRSGEN ISSSEIEKAL MSHPDILDAA VIGVPDHIRD EAVKAFVIFN EGVSLSIDEI
LNYCSENMAK FKVPSFVEIR ESFPRTCTCK IDKKLLA
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