| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3212 |
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| Symbol | |
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| ID | 5613319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3892660 |
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| End bp | 3894144 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934150 |
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| Product | putative outer membrane protein |
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| Protein accession | YP_001474944 |
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| Protein GI | 157376344 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTT ACCAAGTCGC CCCTGTTGTA GTGGCAATGA TATTGGCTGG TTGTTCGGTC
GGCCCGGATT ATCAAAAGCC AGAAACAAAT TTAGACAGTA ACTTATATCA AGCGTATCTA
TATCAAAATA CACCAGGGAC TGAAGTCGGG GATACACAGT CAATAAAACA TGCGTGGTGG
ACACAGTTTA ATGATCCAAT ATTGAATCAA TTGGTCATAG ATGCACAAAA CCAATCCATA
CCGCTTAAAA TTGCCGCGCA GCGCATTCGT ATGGCGCAGT CGTATCAAAG CGCCATAGAG
TCATTTAAGG TGCCGACGGT AAATATAGGT GCGGGATTTG GCAACTATCA ATTAAGTAAA
AATGACCCAT TAATAGGATC TGCTATAACG GCGATTAACC CAATCAGTGG CGAAGAACTT
GGACTGGTAG ATGATAACAA TAGCGCTTTT TTTGCAGGTG CGACCATAGC TTGGGAAGTC
GACCTCTTTG GTCGAATCGA CAGACAGGTC AATGCTGCCG CTATTCGAAA GGAGCAGCTG
GTTATCATGC GCGAGGGGTT AACCACGCTG ATCACCTCTG ATGTTATCCA TAACTATCTG
CAAATGCGCG GGGCACAGGA GCGTAAGCAA ATAGCACTGC AGACGGCTGA AGATCAACGG
CGTACTCTTG AATTGGTCAG ACTCATGGTT AAGAGCGGGT TCGGTTCGGA CCTTGATGAG
GCCCGCGCCA AAGCAATGCT TGCAGCCACT CAGTCTATGG TGCCACAACT GGAGATTGCG
GAGAATGCAC ATAAGCAGCG CTTAGCCATT TTATTGGGGG AAACACCCCT GCAAAGTCAT
CGGCGCTTTA CTCAGGTTAT GCCACTGCCA AGTTTTGATG GGGTGATCCC AACGGGTCTA
CCTTCAGAGC TGCTCAATCG CAGGCCAGAT ATTCGCATAG CCGAACGTGA AATGGCTGCC
GTTAGTGAAG AGCGAGCGGC TGCGATCGCT GCACAGTATC CAAAAGTATT CTTAACCGGT
GCACCGGGTG TGCTCGCTAA GGATTTTGAC GATTTATTTA GCAGTGATTC TATCGCTTGG
GCTGCGAGTG CCGGCATTAG TTGGAATGTA TTCGATGGTG GTCGCGGTGA TGCCATGGTA
GATATGCAGC AAGCGCGTTT TGATGCCAGC GTTTTGGGTT ATAAGCAGTC GGTGAACGCA
GCCTTTGGCG AGGTGGAAAC CTTGCTGCAA GGTTATGGCC ATAGCCAGCA ATATGTGCAA
TTAGTGAGTG AAGCAGAGGC TGCGACAAAC TGCGCTGTAG ATAAAGCCAA ATCACTTTAC
AGGGCGGGTC TAAGCGATTA CTTGTCTATT TTAGATGCAC AACGGCAGCA AAATATGATG
AAAGACCGGG TTGTCGCAGC CAAGCTGCAA ACGGCGCATA TGACGATTGG ATTGCATAAA
GCGCTTGGTG GAAACTGGCA AGTCGGTAGC GATTCATCAA CATAG
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| Protein sequence | MNFYQVAPVV VAMILAGCSV GPDYQKPETN LDSNLYQAYL YQNTPGTEVG DTQSIKHAWW
TQFNDPILNQ LVIDAQNQSI PLKIAAQRIR MAQSYQSAIE SFKVPTVNIG AGFGNYQLSK
NDPLIGSAIT AINPISGEEL GLVDDNNSAF FAGATIAWEV DLFGRIDRQV NAAAIRKEQL
VIMREGLTTL ITSDVIHNYL QMRGAQERKQ IALQTAEDQR RTLELVRLMV KSGFGSDLDE
ARAKAMLAAT QSMVPQLEIA ENAHKQRLAI LLGETPLQSH RRFTQVMPLP SFDGVIPTGL
PSELLNRRPD IRIAEREMAA VSEERAAAIA AQYPKVFLTG APGVLAKDFD DLFSSDSIAW
AASAGISWNV FDGGRGDAMV DMQQARFDAS VLGYKQSVNA AFGEVETLLQ GYGHSQQYVQ
LVSEAEAATN CAVDKAKSLY RAGLSDYLSI LDAQRQQNMM KDRVVAAKLQ TAHMTIGLHK
ALGGNWQVGS DSST
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