| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3135 |
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| Symbol | |
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| ID | 5611290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3784040 |
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| End bp | 3784933 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934073 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001474867 |
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| Protein GI | 157376267 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.85693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTG AATTACTACT GCAACTCATC ATCAACGGCC TGATTGTCGG CCTCTTGTAT
GGCGTTGTGG GTATGTGTTT TGTCTTGGTC TATAAATCGA CACAGATTGT AAACTTCGCC
CAGGGAGAGT TCCTGCTGGT GGGCGCCTGG GTGTGTTGGG CGTTCCTAAT CTATATGGAG
TTGCCGTTCG TGGTCGGCTT CCTGTTGACC CTCTGTTTTA TGGCCCTGTT TGGTGTGCTA
CTGCAGATGA TAGTCCTGCG TCCCATGATA GGCGAGCCGA TTATCTCGGT CATCATGGTG
ACGATCGGCT TGTCGATATT CTTTCAGTCA TTAACGAAAT GGATATTTGG CGTTTCTCCG
CAGAGTTACC CCAAGGTTTT CGATACTCAC TCTATATCTC TCTTTGGCCT CAACGTTGAA
CTGGCCTATC TGATGAGTAC TGTCATCGCA CTGTGCATCA TGGTGGGTTT CTTCTTCTTC
TTTAAATACT CAAAGCATGG TCTGGCGATG CGGGCTACGG CGTTCGATCA GCAGGTTGCT
CAGAGCCTGG GGATCTCCGT TAAGCAGGTC TTCGCCATGA GCTGGGGTAT TGCGGCCACG
GTTTCGGCAA CGGCGGGCGT GGTGATAGGC ATGGTTAATG GGGTCTCCGA CTCATTGTCT
GCCATCGGTA TCAAGGTGTT CCCGGCGGTG ATATTAGGCG GATTAGACTC CATCGTGGGC
GCTATCGTGG GCGGTGTGAT CATTGGCGTC TTAGAGAATG TTGCCGAGTT CTTCGATAGC
CAGTACTTAC ACATAGGCAA CATGTATGAC ATCGCGCCGT TTTACGTGCT GTTAGTGATC
CTCTGGTTTA AACCCTATGG CCTGTTTGGT ACCCGGGATA TCGAGCGTAT CTAG
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| Protein sequence | MNFELLLQLI INGLIVGLLY GVVGMCFVLV YKSTQIVNFA QGEFLLVGAW VCWAFLIYME
LPFVVGFLLT LCFMALFGVL LQMIVLRPMI GEPIISVIMV TIGLSIFFQS LTKWIFGVSP
QSYPKVFDTH SISLFGLNVE LAYLMSTVIA LCIMVGFFFF FKYSKHGLAM RATAFDQQVA
QSLGISVKQV FAMSWGIAAT VSATAGVVIG MVNGVSDSLS AIGIKVFPAV ILGGLDSIVG
AIVGGVIIGV LENVAEFFDS QYLHIGNMYD IAPFYVLLVI LWFKPYGLFG TRDIERI
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