| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3097 |
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| Symbol | |
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| ID | 5610638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3734505 |
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| End bp | 3735716 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934035 |
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| Product | nucleoside-diphosphate sugar epimerase |
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| Protein accession | YP_001474829 |
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| Protein GI | 157376229 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.876352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACCAA CTGGTAGCCC AATGACTGAC ACCCTGAAAT TGATTGGAAG AGAGAAAGCA
CTTTTTTCAT CAGACATTAG CCAACATGAA AGCCTGTTGG CCGGCGAAGT ATGTCGGTCG
CGTTTTCTGG TTCTGGGTGG TGCCGGCTCA ATTGGTCAGG CCGTCGTTAA AGAGATCTTT
AAGCGTTCCC CGTTGAAGCT TCACGTGGTC GATATTAGTG AAAATAATTT AACTGAACTA
GTTAGAGATA TACGCAGCTC TTTTGGGTAT ATCCAAGGTG ACTTTCAAAC CTTTGCCCTT
GATATAGACT CTATAGAATA TGACGCGTTT ATAAATCAAG ATGGCCTGTA TGATTACGTA
CTGAATCTTT CAGCGCTGAA ACATGTAAGA AGCGAGAAAG ATCCCTTCAC CTTGATGCGT
ATGATCAATG TTAATATTTT CAATACAGAC AAGACCATAG AACAGTCGAT AGACAGTGGC
GTTAAGAAGT ATTTTTGTGT CTCCACCGAC AAGGCCGCAA ATCCGGTCAA TATGATGGGG
GCATCTAAAC GTATCATGGA GATGTTCCTG ATGCGTCGTA GTCAAAATAT TACTATATCC
ACCGCACGTT TCGCCAATGT GGCATTCTCT GATGGCTCTT TGCTACACAG TTTTAATCAG
CGCATCTTGA AACATCAACC CATAGTCGCG CCAACTGACA TTAAGCGTTA TTTTGTCACA
CCAAAAGAGT CCGGTGAGCT CTGTTTAATG TCCTGTATTT TTGGCGAGAA TAGAGATATC
TTCTTTCCTA AGCTTGATGA ATCTCAACAC CTTATATCCT TTGCTGACAT AGCTAAAAGG
TATCTTTTAG CTCGAGGCTA TGAAGCTTAT ATTTGCAGTA GCGAAGAGGA GGCCAGGCAA
CTGGTATCCA CCCTACCCGC TAAGGGTCTG TGGCCATGCT ACTTCACTGT CAGTGATACC
AGCGGAGAGA AAAATATTGA GGAGTTTTAT ACCGACAATG AAACCCTCGA TATGACCCGA
TATGCAGAAC TGGGGATTAT TAAAAATGAT CTTGAATACG ATCCAGGGTT GATCGAACTG
TTTGAAAAAA CGATTCAATC GATGAAGTCC TACAAATCAT GGAGCAAGAA GCAGTTAGTT
GAGCTTTTTC ATCAAATGTT GCCTGAGTTC GGCCATAAAG AAACCGGGAA GTCTCTCGAT
GAAAAAATGT AA
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| Protein sequence | MRPTGSPMTD TLKLIGREKA LFSSDISQHE SLLAGEVCRS RFLVLGGAGS IGQAVVKEIF
KRSPLKLHVV DISENNLTEL VRDIRSSFGY IQGDFQTFAL DIDSIEYDAF INQDGLYDYV
LNLSALKHVR SEKDPFTLMR MINVNIFNTD KTIEQSIDSG VKKYFCVSTD KAANPVNMMG
ASKRIMEMFL MRRSQNITIS TARFANVAFS DGSLLHSFNQ RILKHQPIVA PTDIKRYFVT
PKESGELCLM SCIFGENRDI FFPKLDESQH LISFADIAKR YLLARGYEAY ICSSEEEARQ
LVSTLPAKGL WPCYFTVSDT SGEKNIEEFY TDNETLDMTR YAELGIIKND LEYDPGLIEL
FEKTIQSMKS YKSWSKKQLV ELFHQMLPEF GHKETGKSLD EKM
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