| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2957 |
|---|
| Symbol | |
|---|
| ID | 5610656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3582264 |
|---|
| End bp | 3582950 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933897 |
|---|
| Product | adenylyl-sulfate kinase |
|---|
| Protein accession | YP_001474692 |
|---|
| Protein GI | 157376092 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0529] Adenylylsulfate kinase and related kinases |
|---|
| TIGRFAM ID | [TIGR00455] adenylylsulfate kinase (apsK) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTT TTATGTCATT GTTATCGAAA ACAGCAGCGT CGCCTTATCA GGAAATAGAG
AGCGAAGGCG ATAAATCCTC CGATGTTGTC TGGCATCTTG CGAGTGTCTC TCATGCTCAG
CGAGAGACGG CCAATGGTCA TGCTCCGGCG GTACTCTGGT TTACCGGCTT GAGCGGTTCG
GGAAAATCGA CAGTCGCGAA TGCCGTCGAT AAAATGCTGC ACGATTTAGG ATGTAAAACC
TATGTGCTGG ACGGTGACAA TGTTCGTCAT GGTCTAAATG GTGATCTAGG CTTTTCAGAT
GCCGATAGGG TTGAGAATAT CCGCCGGATA GGTGAGGTAT CTAAGTTGTT TGTCGATGCG
GGTTTGCTGG TCTCTACCGC CTTTATCTCT CCCTTTGTAG AAGATAGAGA GAGCGTGCGA
GCTCAGCTCA GCGATTCTCA GCATAGCAAT AGTCAGTTTA TCGAAGTGTA TATCGACACG
CCCATCGAAG TATGTGAGCA GCGCGATCCT AAAGGTCTGT ATAAGAAGGC TCGCGCCGGT
GAGATAAAGA ACTTTACCGG TATTGATTCG GCCTATGAAC TACCGATTAA CCCGGAAGTC
CATGTTAAGA CCGCAGAGCA ATCCATCGAG GCCTGCGCTC AGCAAGTGGT CGATTATCTG
AAATGTAATG GCTATCTCGA TGTGTAG
|
|---|
| Protein sequence | MDFFMSLLSK TAASPYQEIE SEGDKSSDVV WHLASVSHAQ RETANGHAPA VLWFTGLSGS
GKSTVANAVD KMLHDLGCKT YVLDGDNVRH GLNGDLGFSD ADRVENIRRI GEVSKLFVDA
GLLVSTAFIS PFVEDRESVR AQLSDSQHSN SQFIEVYIDT PIEVCEQRDP KGLYKKARAG
EIKNFTGIDS AYELPINPEV HVKTAEQSIE ACAQQVVDYL KCNGYLDV
|
|---|
| |