| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2914 |
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| Symbol | |
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| ID | 5609937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3525505 |
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| End bp | 3526392 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933854 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474649 |
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| Protein GI | 157376049 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.298049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACATAC GCCAGTTAAA ACATCTGGAT GCATTGGCTA AAAATGGCAG TTTCACTAAA
GCCGCCGAGA GCCTCAACAT GGCTCAACCC GCCCTTAGCC AGAGTATTAA GCGGTTAGAG
CTCTCACTGG GTGTCACTCT GGTTAACAGA GGGGGCACGG CCAATAAGCG GGGAAAAAAA
CTCAGCCTGA CGGCAGAAGG TGCGGCTCTG CATCAACACG CCTTATTGAT CATCAAACAA
CTCAAACAAG CCGAAGCCCA TATCAAATCG ATGGCAAACT TAACTAAGGG TGAGGTTCGG
ATAGGTGTAC CCGGTATGTT GGGATCATTT TACCTCCCCT CCAGACTGAT GGCCTTTCGC
CATCAATACC CGGATCTTAA GCTGTCACTA TTCGAAGGGG GAACACGGGA TTCACTGAAA
ATGTTATCAC GTGAAGAGGT CGACATCGCT ATCATCACGG CTCAAGATCT CAGCCCTGAA
TTCGAGAGTC ACCTGTTGCT CACAGAGCAG ATGGTCGTCG CTCTGGGAAC CGAACACCCA
CTGGCCGATG AAACGGCTAT CAGCCTGGAA CAATTTTTCG AGCATGAGTT GGTGATGTTT
AAACCTGGCT ACTTTCATCG GGAGTGGATG CTGTCACAAG CGAAAACATT GGGGCTAAAC
GCAAACATCG CCTTCGAAAC CAATCTTATC AACTTAATCA AGCAAGTGGT CTCACAGGGC
TTTGCCATCA CCAGTGTGCT GGAGATGGTG ATAAGTGAAA GAGATGATAT CTTAGCGAAA
CCATTTAACC CTGAGGTCTA CCTTGACCTT CATATCGCAT GGAAAAGAGA CAGACCAATA
AGTCAGGCCG ACAGAGCCTT TGTCGATTTT CTGATGCAGA ACAGATAG
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| Protein sequence | MDIRQLKHLD ALAKNGSFTK AAESLNMAQP ALSQSIKRLE LSLGVTLVNR GGTANKRGKK
LSLTAEGAAL HQHALLIIKQ LKQAEAHIKS MANLTKGEVR IGVPGMLGSF YLPSRLMAFR
HQYPDLKLSL FEGGTRDSLK MLSREEVDIA IITAQDLSPE FESHLLLTEQ MVVALGTEHP
LADETAISLE QFFEHELVMF KPGYFHREWM LSQAKTLGLN ANIAFETNLI NLIKQVVSQG
FAITSVLEMV ISERDDILAK PFNPEVYLDL HIAWKRDRPI SQADRAFVDF LMQNR
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