Gene Ssed_2876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2876 
Symbol 
ID5611330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3481832 
End bp3483052 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content44% 
IMG OID640933795 
ProductNnrS family protein 
Protein accessionYP_001474611 
Protein GI157376011 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3213] Uncharacterized protein involved in response to NO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.534905 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.07371e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACCTTA TAATACCCGA CATATTTACT AGGTTATTAG AGAGTGTCAT GTTAAATATC 
GATGAACCGA CTCATACACA ATCCAAATTT TCACTTTTTA AACTAGGTTT TCGTCCTTTC
TTCCTCTTAG GCGCCATGTT TAGCCTTATG GCCATCACCA TTTGGGGAGG CTTCTTCTTT
GGCCATATTC AGTTTTCGCC TCATGGAGAT CCAATATGGT GGCATGGACA TGAGATGATA
TTTGGCTTCG TTATCGCCAT CATTGCAGGC TTTCTGCTAA CGGCTGTACA AAACTGGACC
GGACAACCGG GAGTTAAAGG TAAATCCCTC ATGATCCTGG TCTTGGTTTG GATATTACCC
AGAGTATTAC TGCTTAATAA AGAGTGGGTA TCACTGGAAG TCGTCATGGC GATAGACCTG
GCCTTTGCTC CATTAACCGC ACTCTTGATG GCAAGATCGG TATTAAAGGT TAAACAATGG
CGAAATTTTG TCTTTGTGCC AATTTTATTG ATGCTGATGT TAGTCAACGC AATAAGTTAT
TACGGTCTGC TAACTAATGA CCCTGCGTTA TCTCAAACGG CTCTACACTG CGCTATATTG
CTCATGGTCA CAGTCGTGGC ACTGATAGGC GGTAGAGTGA TTCCATTTTT TACCGAAAGA
GCAACACAAT GGCAGCGGAG TCCGAATATT GTTTGGCTCG AAATCGTCAC CTTTATCAGC
CTTATTTTTC TTATCCTGGC AGTATTATTT CAACAGCCAC TCGTTATCCG GACAAGCGCA
GGCATTGCCG GAATAATCTT ACTGATAAGG TGGTCACGCT GGGGAGGAAG ACACACTGCA
CGCGTTCCCC TGTTATGGTC ACTCCATGTG AGCTATTTTT TCATTCCGCT AGGCTTATTA
CTTATCGCTA CGGGTGAGAA TTTCTCCGCA GGCTTGCATG GGATCACCTT AGGTGGCTTA
GGAGGGATGA TTTTAGCTAT GATGGCCAGG GTATCTTTAG GCCATACAGG CAGAAACTTA
ACCCCACCAA AAATAGTAAC ACTTGCTTTT GCACTCATCA TTCTGGCCAC AGTATTAAGG
ATCTTGGCAG GATTAATGAT GAGTTACTAC CTTCCGTTGC TCGAGGCTGC AATCGTTTGT
TGGGTGCTCT CTTTCGCCAT ATTCATTTAT CACTATACCC CGATTTTACT CAGAGCCCGA
GTGGACGGTA AACCCGGTTA A
 
Protein sequence
MHLIIPDIFT RLLESVMLNI DEPTHTQSKF SLFKLGFRPF FLLGAMFSLM AITIWGGFFF 
GHIQFSPHGD PIWWHGHEMI FGFVIAIIAG FLLTAVQNWT GQPGVKGKSL MILVLVWILP
RVLLLNKEWV SLEVVMAIDL AFAPLTALLM ARSVLKVKQW RNFVFVPILL MLMLVNAISY
YGLLTNDPAL SQTALHCAIL LMVTVVALIG GRVIPFFTER ATQWQRSPNI VWLEIVTFIS
LIFLILAVLF QQPLVIRTSA GIAGIILLIR WSRWGGRHTA RVPLLWSLHV SYFFIPLGLL
LIATGENFSA GLHGITLGGL GGMILAMMAR VSLGHTGRNL TPPKIVTLAF ALIILATVLR
ILAGLMMSYY LPLLEAAIVC WVLSFAIFIY HYTPILLRAR VDGKPG