Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2684 |
Symbol | |
ID | 5612132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3240316 |
End bp | 3241308 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933603 |
Product | cytochrome-c peroxidase |
Protein accession | YP_001474419 |
Protein GI | 157375819 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1858] Cytochrome c peroxidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.831831 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTAT TATCTCCCCT TTCTCTTGCA ATCCTGGCTG CAATGAGCGC AGCACCTGCC GCAGCAAAAG AGCCAATTGA AATTATCCAA CCAGCAAAGA TCACGGCACC AGAAAAAGTT GAATTGGGAA AGATGTTGTT CTTCGAGCCA AGGCTCTCAA TGTCTGGTTT TATCTCCTGT AACTCATGCC ATAACCTATC GCTTGGCGGT GTCGATGCAC TTCCAACCTC TATTGGACAC AACTGGCAAG AGGGCCCGAT TAACTCTCCT ACGGTCCTGA ATGCTGAATA CGGTCTGGCA CAATTTTGGG ACGGGCGTGC AAAAGATCTC AAAGAACAAG CCGGTGGGCC AATCGCTAAT CCTGGAGAGA TGGGTTATAC CCATGAGCTT GCCGTCTCAA CTGTAAACTC CATGCCAGCC TACCAGACAA AGTTTGAAGC CATTTATGGT AAGAACTCGG TCAACATTGA CAATATTACC GATGCCATCG CCGAGTTTGA AAAAACACTG GTTACGCCGA ACAGTTCTTT CGATCTCTAT CTTCAAGGAG AGCAGGACGC GATCACCGCC GAAGCAAAAT CAGGTTATCA GCTCTTTAAA AATAAAGGTT GTACCAGCTG TCACAATGGA CCCGCGGTTG GTGGCACCAT GTATATGAAG ATGGGACTAG TGAAACCGTT CCACACTAAA AACCCGGCAG AGGGTCGCAT CGCTGTAACT GGAAAAGAGG CCGATAAATA TGTCTTTAAA GTTCCGACAC TGCGCAATAT CGAACTAACC TACCCTTACT TTCACGATGG TGCGACCTGG ACCTTAGAGG AAGCGGTCAA CACGATGGCT GATATTCAGC TTGGTCAGCA ATTATCTGAG AAAGAGACAG TTGAGATGGT GGCATTTCTT AAGTCGCTCA CCGGAGAGCA GCCACAGATA GTGTTACCTA TCCTGCCACC ATCGAATGCG AATACACCTA AGCCCGTCCC TTTTGAAAAA TAG
|
Protein sequence | MKLLSPLSLA ILAAMSAAPA AAKEPIEIIQ PAKITAPEKV ELGKMLFFEP RLSMSGFISC NSCHNLSLGG VDALPTSIGH NWQEGPINSP TVLNAEYGLA QFWDGRAKDL KEQAGGPIAN PGEMGYTHEL AVSTVNSMPA YQTKFEAIYG KNSVNIDNIT DAIAEFEKTL VTPNSSFDLY LQGEQDAITA EAKSGYQLFK NKGCTSCHNG PAVGGTMYMK MGLVKPFHTK NPAEGRIAVT GKEADKYVFK VPTLRNIELT YPYFHDGATW TLEEAVNTMA DIQLGQQLSE KETVEMVAFL KSLTGEQPQI VLPILPPSNA NTPKPVPFEK
|
| |