| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2412 |
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| Symbol | |
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| ID | 5609772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2933737 |
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| End bp | 2935374 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933323 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001474149 |
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| Protein GI | 157375549 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.516535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000653474 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGCCA TACTCAGACG TTTCACTATA CTTCACCGTT TAATCTTGAT GTTAGCGCTT
GCCGCTATAG GCACATTTGT TTTTGCCAGT TTCTCCATCA TTGAACAAAG AAATAACCTG
ATTGAACAGA AATGGGTTCA AAATGATGCA CAACTCAGTA CCGTTCTCAG TGTTATAGAG
GCGCATCGCC AACAGGCACT CGAAGGCAAG ATAACCTTAG ATGATGCCAA ACAGGAAGCG
GCAAACTTAG TTAATAAAAT AAACTTTGGT CAAGACGGAT TTTTTATCCT TGTTAATGCA
GAGAATAACA TTATCTCCCA TGGCGTATCT CCAAAACTCA TTGGCCAAAC TTCTGACGTT
ATTCGAGCAC AAGACGGTCA TATCACGCTA TCAGATATGG TAAAAGAAGC GCAGAGAGAC
TCTGTTTCTA AACAGACATT TTCCTTTAAA AACCCGGTAT CAGGTGTCAT AGAAGAGAAG
ATGCTTGAGG CCAGATATTA CCCTGCTTGG CAATGGACGC TGGTCACCGG TGCTTACATG
AGCGATATTA ACGACGCCAC GTTCTCACTA CTTCCCGGAT ATCTGGTCAT CATGACCTTG
ATTGCCGCAC CAATATTTGC CTTTTTCCTT GTTCTCAACC ACTCCATCAG CACACCATTA
AAAGAAGCCA TTGCAGCTAT GGAAGATATT GCCAAAGGTG AAGGTGACCT GACTAAACGT
CTGCCAACAA AAGGCAATGA TGAGGTGGTC GAGCTCGCTA TCGCCTTTAA TCTTTTTGTT
GAAAAGATTG GCAACACTGT CGGACATTTA AAGCCACTTG GCTCAAGTTT GAATCAAGAT
GCAAATCGCT TACTCGCATC CGTCGAGGAG ACGAATGTGA GCGTCGATAA CCTTCATCAA
GAAACCAGCA GCGTTGCCAC GGCCATCAAC CAAATGCTGT CTACAACCCA AGAGATGGCC
AGTAATACCC AACAGGCTGC CGATTCCGCT AACAGCGTAA AAAACCAGGC TCAACAAAGT
AAAGCCATGA TGGACCTGAC GGTATCCAAT TCTGAGCAAT TGGTCGATGC GCTGCAAACC
GCAGAGTCAA TTACACACGA TTTAGGCAAC TCCTCACAGC AGATCGGCAG TATTCTGGAC
GTAATAAGAG GCATTGCTGA ACAGACTAAC CTGTTAGCAC TCAATGCAGC CATTGAAGCC
GCACGCGCCG GCACACATGG CAGAGGCTTT GCGGTTGTAG CCGATGAAGT CAGGGCTCTG
GCAACCCGAA CTCAAGAATC AACCAATGAA ATTCAAAAGA TTATTACCGA AATACAATCG
GGTGTATCTT CGGTCATGAC CAGCAACGCT GGAACGCAAC AAACCTCGGT TAAACTTCAG
TCACAAGCCA AAGAAGCCGG TGATGCGTTA GGGGAAATTT TAGAACTTAT CGCCCATATC
AGTGATATGA ATACCCAGCT CGCCAGTGCC ACCGAGGAAC AATCCTTGGT TACCGAAGAG
ATTAACCGAA ATATCTGTAG CATTACCGAG CTCACAGAGG TCTCGGTACA GGCTAACGAG
AGCAATCGTT GTGCAGCCGT TTCCTTACAG GATATCAGTA AAGACACGGC GCAGACCCTT
GGCCAATTTA AAGTTTAA
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| Protein sequence | MIAILRRFTI LHRLILMLAL AAIGTFVFAS FSIIEQRNNL IEQKWVQNDA QLSTVLSVIE
AHRQQALEGK ITLDDAKQEA ANLVNKINFG QDGFFILVNA ENNIISHGVS PKLIGQTSDV
IRAQDGHITL SDMVKEAQRD SVSKQTFSFK NPVSGVIEEK MLEARYYPAW QWTLVTGAYM
SDINDATFSL LPGYLVIMTL IAAPIFAFFL VLNHSISTPL KEAIAAMEDI AKGEGDLTKR
LPTKGNDEVV ELAIAFNLFV EKIGNTVGHL KPLGSSLNQD ANRLLASVEE TNVSVDNLHQ
ETSSVATAIN QMLSTTQEMA SNTQQAADSA NSVKNQAQQS KAMMDLTVSN SEQLVDALQT
AESITHDLGN SSQQIGSILD VIRGIAEQTN LLALNAAIEA ARAGTHGRGF AVVADEVRAL
ATRTQESTNE IQKIITEIQS GVSSVMTSNA GTQQTSVKLQ SQAKEAGDAL GEILELIAHI
SDMNTQLASA TEEQSLVTEE INRNICSITE LTEVSVQANE SNRCAAVSLQ DISKDTAQTL
GQFKV
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