| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2344 |
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| Symbol | |
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| ID | 5610358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2851080 |
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| End bp | 2851955 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933255 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001474081 |
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| Protein GI | 157375481 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.415258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000160682 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTGGATT GGGTTCAAAA AATTGCCTTC AGCGACAGTA GTCCTCTCGA AACCCAGGGG
ATGGAACATA AGTTTGGCTT CAGAAGGCTT CAACCCAAGG TGATGCCCCA TAGCCATTGG
CACGGACATA TAGAGATTAA CTATCTATTT AACTGCTCAG CAGATTATCT GATTAACGGT
AAGAAGATAA GTGTGCCAGA AGGACGTATG TTGCTGTTTT GGGCCTCCTT TCCACACCAG
ATGACCGCGA CATACGGCGA GGGCGATCTG GTTAATGTCT ATGTTCCCTT GCAGGCATTT
TTAACATGGA AGCTTCCCAA TGAGTTTGTC AGTCAGCTTT TGCATGGTGA GGTATTAGTT
TCCGATAGTT TGTATGCCTG TGATGAACAG ATCACTCAGA TCTGGGAAAA GGATCTGTTG
AAAAATAATC ACATGATGAC GGTACAGGTT ATCAATGAAA TTCGTGGTCG GATCCGGCGT
ATGTCGCTGG AGAACTACAG CACCTATGAT CTGGCAAATA AAGCGTGTAA TGATAATAAC
GCGCCTACCT TGAGCGGATT GACCCATATC CAAGCCATGC TGCGTTATAT AGCTGACAAT
TATGATCAGA AGATCACTAT TGCCGATGTT GCTAACTCCA CGGGGTTACA TAAAAACTAT
GCGATGAAGT TGTTTAATCG TGTCATGAGG GTTTCAATTA AACAATATAT AAATCAGCTG
CGTTTGCAAC ATGCTCAGGC ACTGTTAGTC GACACCGAGA ATCCTGTATT AAACATCGCT
TTAGAGGCCG GTTTTGGTTC CGTGAGCCGA TTTTATGATA TTTTTCAGCG TGAATATAAT
ATGTCACCTT TAGAGTTCAG GCGGTGCGTC TTGTAG
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| Protein sequence | MLDWVQKIAF SDSSPLETQG MEHKFGFRRL QPKVMPHSHW HGHIEINYLF NCSADYLING
KKISVPEGRM LLFWASFPHQ MTATYGEGDL VNVYVPLQAF LTWKLPNEFV SQLLHGEVLV
SDSLYACDEQ ITQIWEKDLL KNNHMMTVQV INEIRGRIRR MSLENYSTYD LANKACNDNN
APTLSGLTHI QAMLRYIADN YDQKITIADV ANSTGLHKNY AMKLFNRVMR VSIKQYINQL
RLQHAQALLV DTENPVLNIA LEAGFGSVSR FYDIFQREYN MSPLEFRRCV L
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