| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2238 |
|---|
| Symbol | |
|---|
| ID | 5612222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2698600 |
|---|
| End bp | 2699658 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640933148 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473975 |
|---|
| Protein GI | 157375375 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.050189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA TACCACAAGA AGAGCCTGGT GTACGATTTA AAAAGTCAGT TAACAGACCA
AGGAAACTTG TAGTCGTCAT CTATGAGCTT ATTGTAAAAT TTATCAGTTC AACAAGTGGT
GTGCTAGGTC GACTGACTCT TGCTCAGAAG CTTTATCTTC TATCCCTCAT TCTTCTTGTC
CTTCCAGATA ATTTGGGTTT AGTTGCAATA ATTACTGTTA TCGCATTAAC ACTGGAATTT
TGGCCTCTTT TTGTTCGTGT CTGGCACTCT TTATCTGGAA AAGCTGTTTT ACTGCTTTTT
TACGCTATCA TTGCAAACTT TGCCATTGCA GGCGCTGCAT CAGTGGTGAA TGAGGTGGTA
GGTGTAGCAA CAACTCACTT CTCATATACC CACAACTTTG CCATATTGCT TTACTTGCCA
GCATGGGTAA TAGCCATGAC AGCGTTGGCC ATCCTAATGT TGCAAGTTGC CGTGCCTTTT
TATCTTATAG GGCTGCTGCT CTTAAAACCT TTCGGTGTAA AAGGGTTAAA GCTTATTAAC
CACAGCCACT TCAGGTTTAC GACTATGTTC ATACGCCTGA TATTGGCTTC GGTTGTGCTC
TACCACCTTA TTTTAATCGC CAGCTTAAAT AATGAGTTAT CAGACGACTT AAATGATCCT
GACGGGATAG TGTTAAACAA GCTTTCTGAA AGTGATAAGC AAGAACTAGC TACAGAGCTC
GATCGTGCGA ATAAAGATCT TGAAGCTCAG GAAGCAACTA GTGATAAACC GACTATAGGC
TTATCTTTCG GGTCAGATGA AATCAACAAA GAGAAGGAAG AGCTGTATAG AGATGTTCGT
TCTGATTATG AAAAATTGGT CAGAACCTTG ATTGCACGTT TTGCTTATCA ACTGGAATCA
GACAGTCGTT CACGATGCGA GATATCACCA GGTAGTAATG TCGTTGAACT TAATGATTAT
GAAATAGTAG AAATAAGGAA AGATAACACT GCAGACTATG GATTTACGTT CGAAGTTAAG
AAGTGTATAT CTCCCGCCTT CCCGGCGGTG AGTGGCTAA
|
|---|
| Protein sequence | MEQIPQEEPG VRFKKSVNRP RKLVVVIYEL IVKFISSTSG VLGRLTLAQK LYLLSLILLV
LPDNLGLVAI ITVIALTLEF WPLFVRVWHS LSGKAVLLLF YAIIANFAIA GAASVVNEVV
GVATTHFSYT HNFAILLYLP AWVIAMTALA ILMLQVAVPF YLIGLLLLKP FGVKGLKLIN
HSHFRFTTMF IRLILASVVL YHLILIASLN NELSDDLNDP DGIVLNKLSE SDKQELATEL
DRANKDLEAQ EATSDKPTIG LSFGSDEINK EKEELYRDVR SDYEKLVRTL IARFAYQLES
DSRSRCEISP GSNVVELNDY EIVEIRKDNT ADYGFTFEVK KCISPAFPAV SG
|
|---|
| |