Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2146 |
Symbol | |
ID | 5610535 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2597657 |
End bp | 2598550 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640933050 |
Product | ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein |
Protein accession | YP_001473883 |
Protein GI | 157375283 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.543136 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.254057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCGA TAAAGATAAT AATCTGCCTG TTACTACTAC TCGGGCCCCA CACGGTATTC AGCCAGGAGG GACAAGAACT CAGAATCGTC TCCCTTGCTC CTAACTGGAG TCATACCGTT GCAGAGATTG GTGCCATCGA TGACTTAGTG GGCGTTACAC GCTATGCACG ATTTCCGGCA GAGTTGCCTT TGAGAGTCCA GCAGAAACGT ATCGATGTGG TCGGTGGCTT CACGGATATC TCCATCGACA AGATTACCCG GCTCGATCCG GATCTGGTGC TTACCGCCAC AGGCTTACAA CTGAGGTTAA AAGCTAAGTT ACAGGAGTTA GGAATAACCG TTATCCATAT GGAGGAGTCC AGCTTAGAGG AGGTGTACGC TAAGATCTCA TTACTCGGCA AGACCATAGA TCATCAACAA CAAGCCGACG AGCTGGTAGC GTCGATAAAG AGCGAGTTGA AGGAGATAGC GGCCGAGTTC ACGGAGCAAG ACTCACCCGA GGTCTACTAC GAAATAAACT ACCTCTATAA ATGTGTGCCG GGTAAACACT CCTATATGAC CGAGCTGATT GAGCTGGTGG GTGCTAAACC GATCTTTTCC CATCGCGACG GCATAGCCCC TATGGTCACC TGGCCCGAAG TGGTCAAACA AAACCCGGAT GTTATCTTAT TGCCGATGTG GCCCGATGCT ACGGGACCTG TATTCGAGGG GCCACAAGCG GGAAGCGGCA CCACCACCAT AGCCGAGGTT TATTCCCGGG AAGATGCAGA TAAGGTTAAC GCCGTAAACA ACAATGCCGT CAGGTTTATC GACTCGGCCG TCACCAAGCA AGCAGGCCCA AACATCCCAC AGGCCGCCAG GCTGCTTGCC GAGGCGATAT ACGCACAGCA GTAA
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Protein sequence | MRAIKIIICL LLLLGPHTVF SQEGQELRIV SLAPNWSHTV AEIGAIDDLV GVTRYARFPA ELPLRVQQKR IDVVGGFTDI SIDKITRLDP DLVLTATGLQ LRLKAKLQEL GITVIHMEES SLEEVYAKIS LLGKTIDHQQ QADELVASIK SELKEIAAEF TEQDSPEVYY EINYLYKCVP GKHSYMTELI ELVGAKPIFS HRDGIAPMVT WPEVVKQNPD VILLPMWPDA TGPVFEGPQA GSGTTTIAEV YSREDADKVN AVNNNAVRFI DSAVTKQAGP NIPQAARLLA EAIYAQQ
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