Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1960 |
Symbol | |
ID | 5610600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2368129 |
End bp | 2368671 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640932844 |
Product | CBS domain-containing protein |
Protein accession | YP_001473697 |
Protein GI | 157375097 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3448] CBS-domain-containing membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.831698 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.993391 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATGA GAAAGATGTC CAATCGAGAA GTCTTCGCCT CAATAATCGG CGCATTCTTC GCGACATTAT GCGCCTCTTT TTTCAGTAAC AGCATTCTCG AGGCTGATAA TATGCCAATG GTATTAGCGT CGACCGGAGC CTCGGCCATG CTAATCTTTG GGATCCCTCA TAGTCCGGTA TCTCAGCCCT GGCCGCTGGT CGGCGGGCAC ATCATCTCCG CTCTTATCGG CATTTCTGCC TACTATCTGA TCCCCAACCC GGTATTAGCC TCATCAGTTG CCATCGGCAT CGCCATGTTA GCCATGCACT GCACCGGATC TATGCACCCT CCCGGTGGCG CCACAGCGGT TACAGCCGTT ATTGGTGGCA GCACAGTACA TGAACTTGGC TACTACTTTG TCATCGTACC GGTATTTTTT AACTCGATAA TATTGCTTTC GATAGCGATG GCCATCGGCA CTTTCAGAGA GAAAAACCCC TTTGTCACCG AGGGGACGGA ACAGGAAGCT TGGTTAATAC AGCCGATGAA TGGTGAGTCT TAA
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Protein sequence | MPMRKMSNRE VFASIIGAFF ATLCASFFSN SILEADNMPM VLASTGASAM LIFGIPHSPV SQPWPLVGGH IISALIGISA YYLIPNPVLA SSVAIGIAML AMHCTGSMHP PGGATAVTAV IGGSTVHELG YYFVIVPVFF NSIILLSIAM AIGTFREKNP FVTEGTEQEA WLIQPMNGES
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