Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1808 |
Symbol | |
ID | 5611858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2179647 |
End bp | 2181431 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932684 |
Product | sulfatase |
Protein accession | YP_001473547 |
Protein GI | 157374947 |
COG category | [R] General function prediction only |
COG ID | [COG3083] Predicted hydrolase of alkaline phosphatase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00146351 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAAGC GTAAAAAAGA GATGGTACGC GATCGCGTAT CACGACTAGT TAGTTGGGGA CATTGGTTTG CCTTCTTCAA CGGCTTTCTC GCAATGATCG TGGGGATCCG CTATCTCGAT AGCGTCGGCT ATCCGGAAAC CTTGTTGGGT TGGTGTTACC TTGCCATCAG CACGATTGGT CATTTCAGTT TCTTAGCTTT CATCGTCTAT CTGGTTCTGG TTTTTCCGGT CACGTTATTG CTGCCTTACT CCAAAATATT ACGAGGGTTT GCTGCAGTCG TTGCCACGCT CAGCCTGTGT ATCTTATTGT ATGACACCAT CATTTATGAT GATTATGGGC TCCATCTGAG TCCCTTTGTA TTTGATCTGG CTTGGGCCGA TCTCAACGCA TTGCTCCGTG GTACCTCCTA TATTATTACC CCCCTTGGGA TCATCGCTTT AGAACTCACC TTAGCCAACT TCCTTTGGAA ACGAATTGAA AAAATTCATA AGGTGAATTG TGGTAATAAG GTGGTGGCTT TCGTCGGTAT CTGTTTTGTC AGTAGTCATC TGATCCATAT CTGGGCCGAT GCAGCCGATA TTTCCGAGAT CACTCAATTG GACGACGCCT ACCCACTCTC CTACCCTGCT ACTGCACGCT CGTTTATGGA GAGCCATGGT ATAGAGGGTA AAAACACGAC TCGTCGCGGC TCAGATCTTA GAAGCAGCTT AAACTACCCG ATAACACCAT TGCAGTGTAG TGCTGAAGCA CAACCAAATA TCTTACTGAT CACCATTAAT AATCTCAGAG CCGACATGGT CGACGTCAAT ACCATGCCTT ACCTGACCCA ATACAGTGAA GACAATCAGT CTTTCCATCA GCACTTAAGC GGTGGCACTC AATTTGATAG TGGTATGTTC TCCATCCTCT ATGGACTCCA GGGCAGTTAC ATCAATGCAG CCGGTCTAAA CCATACAACC CCGGTATTGA CGCAAACACT CAAGCAACAA AACTATCAAT TAGGCCTGTT CGCAACCCAA GAGTCTGAGT TACAACCTGG TGCGATTTTC TCCGATTTTG AACCTACCAC ATCGAAAGTA AACGACAGTT ATGCCGATGC GGACATTCAA TCTGTTGCAG CATTTAAGAA CTGGCAAGCC ACCCAGACAA CCCCCTGGTT TGGAATGTTA AACTTACGCT CTCCTGAAAC CTACGACACT CCAGTCGGTT TCTTAGGCAT AGAAACCGTC AAGGCCGATA AAAAGCTGAA ACCCGCTCAA CGGGTATTGT TCAATCAATA CAGGCAGTCA TTGAGCTTCA TCGATCAGAA GCTAAAAGAA GTGCTCGAAG CCACTTCAGA CGATACATTA GTCATCATTA CTGGCGTTAG CGGCAAGCTG TTCACCAGTA ATCCCGATGA AGCGAGAAGA AATATGTCTC CAGCCAATGT TCATGTACCT ATGATCATTC ATTGGCCAGG ACAAGCTACG AGCAAACATG TCAACTACCG CACCAGCCAT TATGGAATAG TACCGACATT GATGACCCAA GTGTTGGGCT GTACCAATGC GGCAACGGAT TATAGCGCGG GTAGAAGCTT ACTCGAACCG GATACCGAAT CTTGGGTTTA TATCGGGGAT AGCCGTATCT TTGGTATCTA TCAAAAATCT GAGATCACCG TGATCGACAG ACACGGGCAA TACCGTATCT ATGATGAAAA CTTCGATAAA AGATTGCGCA AAAAAATGAG TGCGCCTGAG CTTATCGAAG TGATGCGCGA AGGCCGTAGG ATGTATCATC ATTAG
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Protein sequence | MVKRKKEMVR DRVSRLVSWG HWFAFFNGFL AMIVGIRYLD SVGYPETLLG WCYLAISTIG HFSFLAFIVY LVLVFPVTLL LPYSKILRGF AAVVATLSLC ILLYDTIIYD DYGLHLSPFV FDLAWADLNA LLRGTSYIIT PLGIIALELT LANFLWKRIE KIHKVNCGNK VVAFVGICFV SSHLIHIWAD AADISEITQL DDAYPLSYPA TARSFMESHG IEGKNTTRRG SDLRSSLNYP ITPLQCSAEA QPNILLITIN NLRADMVDVN TMPYLTQYSE DNQSFHQHLS GGTQFDSGMF SILYGLQGSY INAAGLNHTT PVLTQTLKQQ NYQLGLFATQ ESELQPGAIF SDFEPTTSKV NDSYADADIQ SVAAFKNWQA TQTTPWFGML NLRSPETYDT PVGFLGIETV KADKKLKPAQ RVLFNQYRQS LSFIDQKLKE VLEATSDDTL VIITGVSGKL FTSNPDEARR NMSPANVHVP MIIHWPGQAT SKHVNYRTSH YGIVPTLMTQ VLGCTNAATD YSAGRSLLEP DTESWVYIGD SRIFGIYQKS EITVIDRHGQ YRIYDENFDK RLRKKMSAPE LIEVMREGRR MYHH
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