| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1525 |
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| Symbol | |
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| ID | 5613301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1814334 |
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| End bp | 1816316 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932391 |
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| Product | decaheme cytochrome c |
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| Protein accession | YP_001473264 |
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| Protein GI | 157374664 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.100516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACG TAAAAAATAA TAAATTTGCG CTGCTTCTGG CAGCAAGCGC CGTCTCTATG
GCCTTAACTG GTTGTGGCGG CAGTGATGGT GATGATGGCA ATAACGGCAA TCCTGGTGGT
CCGGTTGCCG AGTATATCAA TACGTTAAAC TTAGACGTGA CTAAGGTCAC CTATGTCGAT
GGTATGCCTA GCATCGAAGT CTTCGCCACG AACGAAGAAG ATCTTCCCGT AGTAGGTCTG
AAAGACTTTG AAGTTAAAAA AGTTGCTCAG CTACTTCCAC AAGGCTCAAC CGGTGCAGGC
GATAATGCAC AGTGGCAGGT TATCGGCTCA CAAAAAACTT TCATCGATAA CCAAGATGGC
AGTTACACCT TCGACATCGA AGTTGAAGGA TACGACTCAG CATTAACGCA GCGCTATAAT
GTGATTGCCA AGGCTTCAAC ACTGTTAGAT GGCGTCACTA CCGTTCCTCA AGCTGAGATC
GCAGAAGATT TCAGTGGTGA AGGCTATGAA GCCACATACA CCAAGGATAT CGTCTCAACC
GCTAGCTGTA ATGCCTGTCA TGCCGAAGGC GAGAAGATTT ACCACAGCTA CATGACACAA
GAAACCTGTG CAACTTGTCA TACTAAAGAG TACGCAGAAG AGCGTGGCAA GCCAGAAATT
GAGTGGAACC ACCTAGTTCA CAACGTCCAT AACTCTGCCA AAGGCTACAA AGCCGACAGA
GATACCGGCG AGTTTACTAA AGATGCAGTG ACGGCTCAGC ATATCGTTCA AAATGACTGT
ACAAACTGTC ACGTTGCGCC AGAAGATGGC ACAGAAGGCT TGACCGAATG GGGTAACTGG
ACTCGCGTTC CAACCATGGA AACTTGTACC AGCTGTCACG TTAACATCGA CTTCGAAGCA
GGCAAGGGTC ACTCACAGCA GGCTGACAAC AGCAACTGTG TCGCTTGTCA TAATGCAAGT
TGGACCGAAG AGCTTCACAC AGAAGATGCA CTTCAGAAGA AAGCCGTTAT CGATCAGATT
GGCATGAATG CAACACTTAC AGCGGTTCAG GATGATAAGA GTGCCAATCT GACCATCAGC
TTTACCGATA GTGCCGGCAA TGTACTGGAT GTCACTAACT TGCTGCCAAA GATTAAGCGA
GTAGAGAGCA TCACAAACGT TGGCCCTAAC TTCCCAATCA TGGGTTACAA CCCAAGTCCT
GGAAATGGTG AGCACAAAGT CGCACTGGAC CTTGTCCAAA GTGGCGAGCT GGCCAACAAT
GCTGAAATCG CCGATGGCAA CTTAGTTATC AATACCGGCA CTCTGCCTTT CGGTGCTGCG
GGCACTGATA CAGACACTGC ATTTAGCTTT ATCGGCCTGG AAGTATGTAG TGATGGTGCT
GAACTCATCA ACTGTGCAGA AGGCGTTGCA ACTACCAGTA TGAAAGCTGA ACTTGCACAT
GGCACACTTT CTGGTGAAGC GCCTAGTACT CGTCATATCG ATTCGGTGAA CTTCGCCACT
TGTGAAAGCT GTCACGGTGA AACGTTTGAG CTTCATAAAG GTTATCACGC CGGCTTCATC
ATGACTGAGC AACTTGGTCG CGAAGTTAAC GGTCAGATGA CTGTGGGTGT CGATGGCTGT
GTGGCTTGTC ACACACCTGA CGGTACATAC ATGAGCGGCG GTAATAAAGG CGCATTCGAG
ATGAAACTGC ACGTGGTTCA CGGTGAGCAG GGTATCATCA AAGATTGTGC TCAGTGTCAT
AACGACTTTA ACCTTGACGC GTTCAAAGTT AAAGGTGCAC TGGCGACACC TGCAGGATAC
ACAACTCCTA TTGCCGCAAC CTGTACCTCT TGTCATACGT CAGACAGCAC TAAGCTTCAC
GCTGTTGGTC AAGGTGCGAT TATCGATGGT TCTTATGAAG CTGCGAACGA TGCAGCACAG
CTTGAAACTT GTTTCTTCTG TCATAACCCG GCCATCAGCG ATCACACTCA GGTGAAGATG
TAA
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| Protein sequence | MMNVKNNKFA LLLAASAVSM ALTGCGGSDG DDGNNGNPGG PVAEYINTLN LDVTKVTYVD
GMPSIEVFAT NEEDLPVVGL KDFEVKKVAQ LLPQGSTGAG DNAQWQVIGS QKTFIDNQDG
SYTFDIEVEG YDSALTQRYN VIAKASTLLD GVTTVPQAEI AEDFSGEGYE ATYTKDIVST
ASCNACHAEG EKIYHSYMTQ ETCATCHTKE YAEERGKPEI EWNHLVHNVH NSAKGYKADR
DTGEFTKDAV TAQHIVQNDC TNCHVAPEDG TEGLTEWGNW TRVPTMETCT SCHVNIDFEA
GKGHSQQADN SNCVACHNAS WTEELHTEDA LQKKAVIDQI GMNATLTAVQ DDKSANLTIS
FTDSAGNVLD VTNLLPKIKR VESITNVGPN FPIMGYNPSP GNGEHKVALD LVQSGELANN
AEIADGNLVI NTGTLPFGAA GTDTDTAFSF IGLEVCSDGA ELINCAEGVA TTSMKAELAH
GTLSGEAPST RHIDSVNFAT CESCHGETFE LHKGYHAGFI MTEQLGREVN GQMTVGVDGC
VACHTPDGTY MSGGNKGAFE MKLHVVHGEQ GIIKDCAQCH NDFNLDAFKV KGALATPAGY
TTPIAATCTS CHTSDSTKLH AVGQGAIIDG SYEAANDAAQ LETCFFCHNP AISDHTQVKM
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