| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1487 |
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| Symbol | |
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| ID | 5612679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1765809 |
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| End bp | 1767020 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932353 |
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| Product | putative NupC family protein (permease) |
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| Protein accession | YP_001473226 |
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| Protein GI | 157374626 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG1972] Nucleoside permease |
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| TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTGT TGATTAGCTT GGCCGGGATC TTTTTTCTTA TACTCTGTGG CTGGATTTTC
TCTGAAAATC GCAGTGCAAT AAAATGGCGT ACCGTTATCG GTGCACTAAC CCTTCAGGCA
GGCTTTGCAG CCCTGGTTCT CTACGTCCCT ATGGGACAAC AGGTACTGGG CAGCGTCAGT
CAAGGCGTCG CATCGGTATT AGGATTTGCC GACGAAGGCA TTAAATTTCT GTTTGGCGAT
CTGGCCAGCA CAGGATTCAT ATTTGCGATT AGAGTATTAC CTCTGGTGAT ATTCATCAGT
GCCCTCATCT CCATGTTGTA CTACTTCGGC ATCATGCAGT GGGTGATAAA AATCATTGGC
GGAGCACTAC AAAAGTTACT AGGCATCAGC CGCGCAGAGT CTCTGGTCGC CACTGGCAAC
ATATTTCTGA GCCAGGGTGA GTCACCACTC TTGGTTAAGC CTTTCCTGCC CCAAATGACC
CGCTCGGAGC TCTTTGCCGT TATGACCGGC GGAATGGCAT CGGTAGCGGG TAGTGTCTTA
GGTGGATATG CGGGTTTAGG TGTCGACCTT AAGTTCCTTA TCGCGGCGAG CTTTATGGCC
GCACCGGGCA GTCTGATGAT GGCAAAGCTA CTGGTACCGG AAGTCGAGAC TCCTGACGCA
GGCCAGGCAA TCGATATGAA CCAGAGTGAG CACAGCAATG CCATCGACGC CTTAGCCTCC
GGCGCCATGA ATGGTATGCG GGTAGCCGTG GCTATCGGTA CTATGCTTAT CGCATTTATC
AGCGTCATCG CGATGTTTAA CGCTGGGCTG GAACAATTGG GTTTATGGTT CAACTTCGAA
GGTGTCACGC TTCAGAGCTT GCTGGGTTAT CTCTTCGCAC CGGTAGCCTT TATCATAGGT
GTACCTGCCA ATGAGATGAT GCAGGCAGGG GGATTCATCG GGCAGAAGCT TATCCTGAAT
GAATTTGTCG CCTTCATGGA CTTTGTCTCG GTGAAAGATC AACTCTCGGC TCACTCTCAG
ATCATCATCA CCTTCGCTCT ATGTGGTTTT GCCAACATAG GTTCAATTGC GATTCAGCTC
GGCAGTATAG GTGTGATGGC ACCGGAGCGC AGCGCTGATG TGGCAAACTT AGGCTTTAAG
GCCGTTCTTG CCGCCACATT GGCTAACCTG ATGAGTGCAG TTTTAGCCGG AATATTTTTC
AGTATTGCTT AA
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| Protein sequence | MQLLISLAGI FFLILCGWIF SENRSAIKWR TVIGALTLQA GFAALVLYVP MGQQVLGSVS
QGVASVLGFA DEGIKFLFGD LASTGFIFAI RVLPLVIFIS ALISMLYYFG IMQWVIKIIG
GALQKLLGIS RAESLVATGN IFLSQGESPL LVKPFLPQMT RSELFAVMTG GMASVAGSVL
GGYAGLGVDL KFLIAASFMA APGSLMMAKL LVPEVETPDA GQAIDMNQSE HSNAIDALAS
GAMNGMRVAV AIGTMLIAFI SVIAMFNAGL EQLGLWFNFE GVTLQSLLGY LFAPVAFIIG
VPANEMMQAG GFIGQKLILN EFVAFMDFVS VKDQLSAHSQ IIITFALCGF ANIGSIAIQL
GSIGVMAPER SADVANLGFK AVLAATLANL MSAVLAGIFF SIA
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